Gene
| Gene Model ID | pfu_aug2.0_1167.1_24740 |
|---|---|
| Locus | scaffold1167.1 : 87885 ... 98585 : - |
| To GenomeBrowser | scaffold1167.1:87885..98585 |
| Genes list of scaffold | scaffold1167.1 |
| Synonym | pfu_aug1.0_10289.1_68170 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1167.1_24740.t1 | 2 | 1 | RRM_1 | 7 | 70 | 4.0e-24 | 84.0 | 2.2e-12 | 1.1e-08 | 34.5 |
| pfu_aug2.0_1167.1_24740.t1 | 2 | 1 | RRM_6 | 11 | 67 | 3.4e-15 | 55.7 | 8.2e-13 | 4.0e-09 | 36.3 |
| pfu_aug2.0_1167.1_24740.t1 | 2 | 1 | RRM_5 | 27 | 69 | 3.7e-06 | 26.6 | 5.5e-07 | 0.0027 | 17.4 |
| pfu_aug2.0_1167.1_24740.t1 | 2 | 2 | RRM_1 | 95 | 163 | 4.0e-24 | 84.0 | 1.9e-16 | 9.6e-13 | 47.5 |
| pfu_aug2.0_1167.1_24740.t1 | 2 | 2 | RRM_6 | 95 | 157 | 3.4e-15 | 55.7 | 6.0e-07 | 0.003 | 17.5 |
| pfu_aug2.0_1167.1_24740.t1 | 2 | 2 | RRM_5 | 132 | 170 | 3.7e-06 | 26.6 | 0.0011 | 5.6 | 6.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1167.1_24740.t1 | gi|625285683|ref|XP_007634559.1| | PREDICTED: tRNA selenocysteine 1-associated protein 1 isoform X5 [Cricetulus griseus] | 0.0 |
| pfu_aug2.0_1167.1_24740.t1 | gi|667259434|ref|XP_008566907.1| | PREDICTED: tRNA selenocysteine 1-associated protein 1 isoform X1 [Galeopterus variegatus] | 0.0 |
| pfu_aug2.0_1167.1_24740.t1 | gi|554561898|ref|XP_005875307.1| | PREDICTED: tRNA selenocysteine 1-associated protein 1 [Myotis brandtii] | 0.0 |
| pfu_aug2.0_1167.1_24740.t1 | gi|743705882|ref|XP_010946255.1| | PREDICTED: tRNA selenocysteine 1-associated protein 1 isoform X1 [Camelus bactrianus] | 0.0 |
| pfu_aug2.0_1167.1_24740.t1 | gi|507656686|ref|XP_004705379.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1167.1_24740.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1167.1_24740.t1 atgatccgtaggtttcagctggagccctacatggatgaagaatttattggaaatgcttttaaagaaatgggagtgtcagt aaagggaattaaagtgatcaagagtaaaatgacaggactgccagcgggttactgctttattgactttcacactcaagaga aagcccgtgaagctatgctgaaattaagcggaaaaaatatccccaacagtaatccacctaaaagattcaaacttaacagc gccagttatggcaaagaacatcttcacatgccagagttttcactttttgttggagatttaacagaggacgtagatgatta caccttgtactatgaatttgctaaaagataccgttcatgtagatctgctaaagttgtacaggaccagaacggtaaaagta aaggttacggatttgtaagatttacagaggagactgaccaacagagagcactcatagagatgcagcacatgaatggtatc ggcaaaaagccgattagggtcagtctggccacacctaaaagaccactccccccagacatgatgggcgtacactacagtca ttattatggacataattacccatatagcagtacatactataattactatggatcacacacaccatatggaaactacgaca accaaagtagctataatcagaatgagtaccgcccggaagaagacgcagatacattagaagagcctgagttagaagtagac acgttcagatataacaaagattacatggagcaaagtgaggttagtaatagaagtggaagatattcagttgaagttgctgt gtattaa |
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Protein
| Protein ID | pfu_aug2.0_1167.1_24740.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1167.1_24740.t1 MIRRFQLEPYMDEEFIGNAFKEMGVSVKGIKVIKSKMTGLPAGYCFIDFHTQEKAREAMLKLSGKNIPNSNPPKRFKLNS ASYGKEHLHMPEFSLFVGDLTEDVDDYTLYYEFAKRYRSCRSAKVVQDQNGKSKGYGFVRFTEETDQQRALIEMQHMNGI GKKPIRVSLATPKRPLPPDMMGVHYSHYYGHNYPYSSTYYNYYGSHTPYGNYDNQSSYNQNEYRPEEDADTLEEPELEVD TFRYNKDYMEQSEVSNRSGRYSVEVAVY |
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