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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_1165.1_18144
Locus scaffold1165.1 : 116546 ... 123595 : -
To GenomeBrowser scaffold1165.1:116546..123595
Genes list of scaffold scaffold1165.1
Synonym pfu_aug1.0_3900.1_52124

Manual annotation
Annotation by Blast2GO
Annotation GO
starry isoform e GO:0004871 GO:0007389 GO:0007409 GO:0009968 GO:0016020 GO:0016055 GO:0016358 GO:0022603 GO:0042067 GO:0048056 GO:0051128 GO:0051960 GO:0065008 GO:0098742

Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_1165.1_18144.t1 5 1 Cadherin 55 69 8.39938e-42 141.3 0.89 4400.0 -2.0
pfu_aug2.0_1165.1_18144.t1 5 2 Cadherin 98 154 8.39938e-42 141.3 1.8e-06 0.0089 16.2
pfu_aug2.0_1165.1_18144.t1 5 3 Cadherin 170 260 8.39938e-42 141.3 2.3e-25 1.2e-21 76.7
pfu_aug2.0_1165.1_18144.t1 5 4 Cadherin 274 349 8.39938e-42 141.3 8.5e-09 4.2e-05 23.7
pfu_aug2.0_1165.1_18144.t1 5 5 Cadherin 357 397 8.39938e-42 141.3 3.3e-08 0.00016 21.8

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_1165.1_18144.t1 gi|260809723|ref|XP_002599654.1| hypothetical protein BRAFLDRAFT_205652 [Branchiostoma floridae] 1.00053e-42
pfu_aug2.0_1165.1_18144.t1 gi|195582246|ref|XP_002080939.1| GD10750 [Drosophila simulans] 8.00001e-42
pfu_aug2.0_1165.1_18144.t1 gi|386767716|ref|NP_001246258.1| starry night, isoform E [Drosophila melanogaster] 8.00001e-42
pfu_aug2.0_1165.1_18144.t1 gi|195333203|ref|XP_002033281.1| GM21230 [Drosophila sechellia] 8.00001e-42

Transcript
Transcript IDpfu_aug2.0_1165.1_18144.t1
Definition-
>pfu_aug2.0_1165.1_18144.t1
atggaatttaaaggaaatctatcttcatggtccatccttataccagtattatgtatgtcgatttattcatatgttcagag
tgctccatttctcaaaaatcctgttcgaaacgaagtgtatgagaaattcagaatagcagtagaggaaacattgcatcatg
tgtataatgcatcagtgatggaagaacagaattcgggactacctgtaacagaaccattattccctccggtactttttgga
gaactggatgcgaatatatcttttctgagagtatcgatggcaatctctgggagcactgtttttacactggatagtagctc
aggacaagtgattgctaaaacgaaactggatagagagcttctgaatcactattccctgatggcaagggcaacctacgaaa
ccgttcatgaaagtgaagttagatatcgattttcctcaataacatacgttgaaattaaggttcttgatgtcaatgataac
agtccagattttgtgggcgatgttatgtcctgtagtgttccagaaaacaaaattgtaggctcacaaatttccaatcttac
tgcaacagatatggatgaggggtttaacaaagaaatagagtatgaaatagctgatggcaatcatgaaggagtttttgcta
ttgatgaattctctggtgttgtaacattgcaaaaaccgttagatttcgagaagacgcagcgatttgaactttcagtgatg
gcgcacgacagaggtaatccatctctaagtagcacagcgaatatcaccgttgacatacttgatgtaaatgacaacaaacc
tgaatttgaattttcaagttaccatggaaacatatctgaacacgttgaaattaatgaaactatattaagtattagggcac
aagatgcggacagtggaattaacaaagagttggaatatttcatagtgcattctgataaagatattccattttatatgtca
aatggcgatattaaggttgaaagaggaattgaaaggcaaaatcatggtcacgttttgtacaattttgatgttatagtaca
cgacaaggattttgtagacgatgctatgtcctgtagtgttccagaaaacgaaattgtaggctcacaagttttcaatctta
cagcaactgacatggatgaatggtttaacaaagaaatagagtatgaaatagccaatggtgatcctgaaggcattttgcca
ttgatgcagtttttggtcttgtaa

Protein
Protein IDpfu_aug2.0_1165.1_18144.t1
Definition-
>pfu_aug2.0_1165.1_18144.t1
MEFKGNLSSWSILIPVLCMSIYSYVQSAPFLKNPVRNEVYEKFRIAVEETLHHVYNASVMEEQNSGLPVTEPLFPPVLFG
ELDANISFLRVSMAISGSTVFTLDSSSGQVIAKTKLDRELLNHYSLMARATYETVHESEVRYRFSSITYVEIKVLDVNDN
SPDFVGDVMSCSVPENKIVGSQISNLTATDMDEGFNKEIEYEIADGNHEGVFAIDEFSGVVTLQKPLDFEKTQRFELSVM
AHDRGNPSLSSTANITVDILDVNDNKPEFEFSSYHGNISEHVEINETILSIRAQDADSGINKELEYFIVHSDKDIPFYMS
NGDIKVERGIERQNHGHVLYNFDVIVHDKDFVDDAMSCSVPENEIVGSQVFNLTATDMDEWFNKEIEYEIANGDPEGILP
LMQFLVL

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