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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_1142.1_08187
Locus scaffold1142.1 : 44198 ... 48275 : -
To GenomeBrowser scaffold1142.1:44198..48275
Genes list of scaffold scaffold1142.1
Synonym pfu_aug1.0_3273.1_23271

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_1142.1_08187.t1 2 1 MFS_1 33 114 7.2e-09 34.8 1.1e-07 0.00053 18.7
pfu_aug2.0_1142.1_08187.t1 2 2 MFS_1 135 264 7.2e-09 34.8 1.8e-07 0.0009 18.0

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_1142.1_08187.t1 gi|260816392|ref|XP_002602955.1| hypothetical protein BRAFLDRAFT_107789 [Branchiostoma floridae] 2.0e-13
pfu_aug2.0_1142.1_08187.t1 gi|260818392|ref|XP_002604367.1| hypothetical protein BRAFLDRAFT_85459 [Branchiostoma floridae] 2.0e-09
pfu_aug2.0_1142.1_08187.t1 gi|260805873|ref|XP_002597810.1| hypothetical protein BRAFLDRAFT_102838 [Branchiostoma floridae] 4.0e-09
pfu_aug2.0_1142.1_08187.t1 gi|260802402|ref|XP_002596081.1| hypothetical protein BRAFLDRAFT_66187 [Branchiostoma floridae] 1.0e-07
pfu_aug2.0_1142.1_08187.t1 gi|260796569|ref|XP_002593277.1| hypothetical protein BRAFLDRAFT_83822 [Branchiostoma floridae] 1.0e-07

Transcript
Transcript IDpfu_aug2.0_1142.1_08187.t1
Definition-
>pfu_aug2.0_1142.1_08187.t1
atgaaggtatcaccgtataataggtatgtatcacagtcgacttatgcgaacaataaaaagcctgcgacattcaaagtgat
taaaacaacatgtcttgttctaacctacattgcaatgggtttgttcctagaaataactggtccaaccctgcaggatcata
aagggagaactcatgtcgattacgaagttattgccagagcagtggcgggaaggagcgcgggcgacttagtcggttcacta
attggtgggatcctggtcgataaagctggtcaccatagtgacatgataattggcatttgtctcctttgtgcagcatcagc
aacaatatcagtaccatgggctcaacagaatctcaccgctggttctgattgtagttcaactgacggtgcacaaatattca
ttacagactcaaaaattgaatatgcctacttaattgctgcgctcccagcagtattgttctctgttgtcttcctactttac
cagttcaaactggcaccacattcagccgcaaatggatcagaagaacatgtccagaaaaggccattcaaagaaatcatcaa
ccccgccatgtgtgccagtggtgatttatgctttggactgtctatctgcattctcatgttccttcaatttttcagtgttg
ttggaggagaacgactcatgagtaaattcattcgcgcttattcggtagatcatattggattttcaaaagacgacggaagt
tacgtagacacggtattctgggtagggttttcagtaggtcgtttcgcaggctttgcagttggcctaacgtttacacaggc
cttgcggtttacttccaggcctaacgttttcaaatatatagtttgtcgcgttgtcacggctcatggacatagtattccgt
atgagtttatttctatcgttaaggatgctgaatag

Protein
Protein IDpfu_aug2.0_1142.1_08187.t1
Definition-
>pfu_aug2.0_1142.1_08187.t1
MKVSPYNRYVSQSTYANNKKPATFKVIKTTCLVLTYIAMGLFLEITGPTLQDHKGRTHVDYEVIARAVAGRSAGDLVGSL
IGGILVDKAGHHSDMIIGICLLCAASATISVPWAQQNLTAGSDCSSTDGAQIFITDSKIEYAYLIAALPAVLFSVVFLLY
QFKLAPHSAANGSEEHVQKRPFKEIINPAMCASGDLCFGLSICILMFLQFFSVVGGERLMSKFIRAYSVDHIGFSKDDGS
YVDTVFWVGFSVGRFAGFAVGLTFTQALRFTSRPNVFKYIVCRVVTAHGHSIPYEFISIVKDAE

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