Gene
| Gene Model ID | pfu_aug2.0_1103.1_11435 |
|---|---|
| Locus | scaffold1103.1 : 97886 ... 100370 : + |
| To GenomeBrowser | scaffold1103.1:97886..100370 |
| Genes list of scaffold | scaffold1103.1 |
| Synonym | pfu_aug1.0_28309.1_40715 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1103.1_11435.t1 | 3 | 1 | Phage_int_SAM_4 | 78 | 102 | 1.3e-07 | 31.8 | 1.2 | 5800.0 | -2.3 |
| pfu_aug2.0_1103.1_11435.t1 | 3 | 2 | Phage_int_SAM_4 | 256 | 320 | 1.3e-07 | 31.8 | 1.8e-09 | 8.7e-06 | 25.9 |
| pfu_aug2.0_1103.1_11435.t1 | 3 | 3 | Phage_int_SAM_4 | 359 | 376 | 1.3e-07 | 31.8 | 0.043 | 210.0 | 2.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1103.1_11435.t1 | gi|390359761|ref|XP_003729558.1| | 3.0e-25 | |
| pfu_aug2.0_1103.1_11435.t1 | gi|558199478|ref|XP_006131162.1| | PREDICTED: uncharacterized protein LOC102461666 [Pelodiscus sinensis] | 1.0e-24 |
| pfu_aug2.0_1103.1_11435.t1 | gi|512817445|ref|XP_004911390.1| | 5.0e-24 | |
| pfu_aug2.0_1103.1_11435.t1 | gi|512844865|ref|XP_004914950.1| | 2.0e-22 | |
| pfu_aug2.0_1103.1_11435.t1 | gi|512831942|ref|XP_002935007.2| | 3.0e-17 |
Transcript
| Transcript ID | pfu_aug2.0_1103.1_11435.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1103.1_11435.t1 atggactctgcaacaaacacagttgcatatcaacaatctggaactcctggcagtgcaatatgcactacatcattttcaca ctgtcctcagggacaaacatgtgttgatcaaatcggacaacagcacagtggttgcatacatcaacaaccagggcggaaca aggtcaccagacctatgcataatactctgggatatgatgcaatggtgcattcgacatcagattactctcagagcttcaca cattccaggagtaaagaatacgctagcagactctctgagcaggaaaatttttcgtcacacagagtggtcaatgaacagag ggattctgcatcaattattcgatctctgggggaccccctcaatagatctgtttgcatcggacagcaatcacaaactgcca atattttgctcctggattcagtcagacaatgcactctcaggggatgcactgacaattcaatgggaaaacatgtttgctta tgcttacccaccgatagcgctcttgccgaaagttcttcagaaagtgagattagaggcatgcatagtaattctaatagcac ctctgtggccaaaaagaccgtggtttcctcgtcttttagatctcctaatagatctccctataccgctgccaccaatcaag gaacttctgactcaaccaagcacaaatctgaatcatccagatccagcagtgttcaatttgacagcctggcttatttcaag catcacctcaaagaggcaggcttttgtaaatcagctcgaaagctactggcatcatcaatcagaagtgggacacagagagt gtataaatacaacaacagacgctacgttcgttggtgccatcaacggaatgaagatcccatttcatgcagtatctctaaag tagcaaactttttggcctctttatttgataaagggctcagttactctactatatgcgtgtaccgttccgctatttctgca attcatgatccagttgatggtcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcagttactctactatatgcgtgtaccgttccgctatttctg caattcatgatccagttgatggtcataaagtaggagaacatccacgaatcattgctctactcaaaggggtgtttaataag caaccgcccaggcgaactttgatacccccatgggatttacgtattgtcttacgacacattcagaaccacccatttgaacc aatggagcaagcaagtttaaaactgaaaaccatgaaagctgtctttttattggcaatcacttcaggcagtagagcagtgg attggtcaagggagactacttttacaaaatattatctgaaggatgtgggtagtgattttgcatcagcagttcttgatgtt gataaggattcctaa |
|
Protein
| Protein ID | pfu_aug2.0_1103.1_11435.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1103.1_11435.t1 MDSATNTVAYQQSGTPGSAICTTSFSHCPQGQTCVDQIGQQHSGCIHQQPGRNKVTRPMHNTLGYDAMVHSTSDYSQSFT HSRSKEYASRLSEQENFSSHRVVNEQRDSASIIRSLGDPLNRSVCIGQQSQTANILLLDSVRQCTLRGCTDNSMGKHVCL CLPTDSALAESSSESEIRGMHSNSNSTSVAKKTVVSSSFRSPNRSPYTAATNQGTSDSTKHKSESSRSSSVQFDSLAYFK HHLKEAGFCKSARKLLASSIRSGTQRVYKYNNRRYVRWCHQRNEDPISCSISKVANFLASLFDKGLSYSTICVYRSAISA IHDPVDGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSYSTICVYRSAISAIHDPVDGHKVGEHPRIIALLKGVFNK QPPRRTLIPPWDLRIVLRHIQNHPFEPMEQASLKLKTMKAVFLLAITSGSRAVDWSRETTFTKYYLKDVGSDFASAVLDV DKDS |
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