Gene
| Gene Model ID | pfu_aug2.0_1072.1_08149 |
|---|---|
| Locus | scaffold1072.1 : 118614 ... 120405 : - |
| To GenomeBrowser | scaffold1072.1:118614..120405 |
| Genes list of scaffold | scaffold1072.1 |
| Synonym | pfu_aug1.0_10452.1_60775 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| potassium voltage-gated channel subfamily a member 1 | GO:0005216 GO:0006811 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1072.1_08149.t1 | 1 | 1 | BTB_2 | 93 | 182 | 1.9e-26 | 92.0 | 7.1e-30 | 3.5e-26 | 91.2 |
| pfu_aug2.0_1072.1_08149.t1 | 3 | 1 | Ion_trans | 224 | 241 | 3.1e-20 | 72.2 | 0.23 | 1100.0 | -1.4 |
| pfu_aug2.0_1072.1_08149.t1 | 3 | 1 | Ion_trans_2 | 226 | 239 | 2.9e-13 | 49.3 | 0.31 | 1500.0 | -1.1 |
| pfu_aug2.0_1072.1_08149.t1 | 3 | 2 | Ion_trans_2 | 242 | 297 | 2.9e-13 | 49.3 | 0.66 | 3300.0 | -2.2 |
| pfu_aug2.0_1072.1_08149.t1 | 3 | 2 | Ion_trans | 280 | 365 | 3.1e-20 | 72.2 | 7.2e-18 | 3.5e-14 | 52.5 |
| pfu_aug2.0_1072.1_08149.t1 | 3 | 3 | Ion_trans_2 | 357 | 414 | 2.9e-13 | 49.3 | 5.8e-17 | 2.9e-13 | 49.3 |
| pfu_aug2.0_1072.1_08149.t1 | 3 | 3 | Ion_trans | 365 | 413 | 3.1e-20 | 72.2 | 1.0e-10 | 5.1e-07 | 29.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1072.1_08149.t1 | gi|524885438|ref|XP_005099327.1| | PREDICTED: potassium voltage-gated channel protein Shaker-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_1072.1_08149.t1 | gi|524885440|ref|XP_005099328.1| | PREDICTED: potassium voltage-gated channel protein Shaker-like isoform X2 [Aplysia californica] | 0.0 |
| pfu_aug2.0_1072.1_08149.t1 | gi|742244290|ref|XP_010863686.1| | PREDICTED: shaker-related potassium channel tsha2-like [Esox lucius] | 0.0 |
| pfu_aug2.0_1072.1_08149.t1 | gi|676463835|ref|XP_009056727.1| | hypothetical protein LOTGIDRAFT_190533 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_1072.1_08149.t1 | gi|658849269|ref|XP_008407174.1| | PREDICTED: potassium voltage-gated channel subfamily A member 2-like [Poecilia reticulata] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1072.1_08149.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1072.1_08149.t1 atgcatttcgtgacaaccgagccgcgaatatcttcatcaaatgttggacattctcacttgtctccctctgactatgtcaa ggggcataaccggaataattcaggcgactcccataacagctttttcaaatttggatcccagctttcgaatctgaacgaag aaggatttgtagatgacatcatcgatgggtctgaatcgattgacccgactaaagatttcatcgacgatcacgaacttatg gacggtcacgattgccggaaggaggggtgtcatcgcgttatcgttaacataagcggcatgaagttcgaaacacagctgcg aacgctgaatcggctgccgaacactttacttggagatcctcataaaagagagaaattttgggaccccaccaggaatgagt atttcttcgacagacatcgcccgagtttccccgcaattttgtatttctaccaaagcgggggtcgcttagaacgtccgatc gaggtgccgagtgatatatttctgaacgaactccagttctttgaaatgggaaagtctgccatcaatttgtttaaacaaaa ggaaggatatattattgaaaacgaagtcgtcattttacctaagggtaacatccagagaaagatttgggagctcttcgaaa taccagactcatcgcttgctgcgaaggttttagcttttgtttctgttttgtttattttggtgtctgttgtagtgttttgt gttgagacacttccagccttctccaactctcagtgcattaatgtcacagtaggttacggctataatggaacagaagtctt aaagcaggtacccaacttcaccgactttttctttataactgaaagcatttgcattgcatggtttgtttttgagttaataa caagatttttatcttctccctctaagtttctcttcgttaagagcttcgtcaattggattgattttctggccattataccc tatatgctgtttatgggcatttatctcgtgacgaaggaatgtagtgcctctagcggtggacttttgtccgtacttcgtgt acttagagttaccagaatcttgaaacttagcaaacattctgaaggactgaagatatttgatgctttctggtgggctgttg tatccatgacaaccgttggttatggtgacgtatatcctcaaggaacgattgggaagttgataggcaccatgacagtcctg tccggacttttagccattgcacttccagttccggtcattgttacaaattttaacaatttttaccaaacgtcaagggagag acaaaaagaacaatag |
|
Protein
| Protein ID | pfu_aug2.0_1072.1_08149.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1072.1_08149.t1 MHFVTTEPRISSSNVGHSHLSPSDYVKGHNRNNSGDSHNSFFKFGSQLSNLNEEGFVDDIIDGSESIDPTKDFIDDHELM DGHDCRKEGCHRVIVNISGMKFETQLRTLNRLPNTLLGDPHKREKFWDPTRNEYFFDRHRPSFPAILYFYQSGGRLERPI EVPSDIFLNELQFFEMGKSAINLFKQKEGYIIENEVVILPKGNIQRKIWELFEIPDSSLAAKVLAFVSVLFILVSVVVFC VETLPAFSNSQCINVTVGYGYNGTEVLKQVPNFTDFFFITESICIAWFVFELITRFLSSPSKFLFVKSFVNWIDFLAIIP YMLFMGIYLVTKECSASSGGLLSVLRVLRVTRILKLSKHSEGLKIFDAFWWAVVSMTTVGYGDVYPQGTIGKLIGTMTVL SGLLAIALPVPVIVTNFNNFYQTSRERQKEQ |
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