Gene
| Gene Model ID | pfu_aug2.0_1052.1_08132 |
|---|---|
| Locus | scaffold1052.1 : 61866 ... 82047 : + |
| To GenomeBrowser | scaffold1052.1:61866..82047 |
| Genes list of scaffold | scaffold1052.1 |
| Synonym | pfu_aug1.0_5277.1_38111 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| dna topoisomerase 1-like | GO:0003677 GO:0003917 GO:0003918 GO:0005694 GO:0006265 GO:0019013 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1052.1_08132.t1 | 4 | 1 | Topoisom_I_N | 95 | 122 | 0.0 | 249.5 | 1.3 | 4000.0 | -3.2 |
| pfu_aug2.0_1052.1_08132.t1 | 4 | 2 | Topoisom_I_N | 171 | 281 | 0.0 | 249.5 | 2.79993e-41 | 8.3e-38 | 129.8 |
| pfu_aug2.0_1052.1_08132.t1 | 4 | 3 | Topoisom_I_N | 279 | 363 | 0.0 | 249.5 | 2.29995e-41 | 6.7e-38 | 130.1 |
| pfu_aug2.0_1052.1_08132.t1 | 2 | 1 | Topoisom_I | 370 | 599 | 0.0 | 276.8 | 0.0 | 0.0 | 276.8 |
| pfu_aug2.0_1052.1_08132.t1 | 4 | 4 | Topoisom_I_N | 571 | 628 | 0.0 | 249.5 | 0.72 | 2100.0 | -2.3 |
| pfu_aug2.0_1052.1_08132.t1 | 2 | 1 | Topo_C_assoc | 575 | 588 | 2.1e-32 | 110.6 | 3.9 | 12000.0 | -4.0 |
| pfu_aug2.0_1052.1_08132.t1 | 2 | 2 | Topoisom_I | 623 | 634 | 0.0 | 276.8 | 2.2 | 6400.0 | -4.1 |
| pfu_aug2.0_1052.1_08132.t1 | 2 | 2 | Topo_C_assoc | 628 | 698 | 2.1e-32 | 110.6 | 7.0e-36 | 2.1e-32 | 110.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1052.1_08132.t1 | gi|524868989|ref|XP_005091292.1| | PREDICTED: DNA topoisomerase 1-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_1052.1_08132.t1 | gi|617442792|ref|XP_007565717.1| | PREDICTED: DNA topoisomerase 1-like [Poecilia formosa] | 0.0 |
| pfu_aug2.0_1052.1_08132.t1 | gi|551498262|ref|XP_005800684.1| | PREDICTED: DNA topoisomerase 1-like isoform X2 [Xiphophorus maculatus] | 0.0 |
| pfu_aug2.0_1052.1_08132.t1 | gi|551498260|ref|XP_005800683.1| | PREDICTED: DNA topoisomerase 1-like isoform X1 [Xiphophorus maculatus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1052.1_08132.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1052.1_08132.t1 atggaagtacagacggctagattacaacaagagaaagctgtcaaacgtccgacagaatcctccaataatgatgtgctatt gtcttctagaaaaggaagaatcgtgaaaactgagaagggatcagggaaatcggcaagcctcagtaaaacaccaaataaaa caccaactaatttagacaagggagacaaggctgaggaatcaaatgaagtctggagatggtgggaagaggagagacatgat gatggagttgaagggacatttttagaacacgaaaagctaaaacctgacagtgctaagaaacgtaaacagctttctgatga tgaagatgatgaggattatgaaaaaaaaccgaagaaaaagaagaaggtgaaaagtggatcaggagagtcggcaagcccaa ttaaaacaccaaataaatcaccaactgatttagacaagggagacaaggctgaggaatccaataaagtttggagatggtgg gaagaagaagaagaaagtcaagatgatggagttaagtggacgtttttagaacacaaaggtcccgtctttgcccctgacta tgagccgatacctaaaaatgtcaagttttactatgacggagaagaggtgaagcttagtcaggacacggaggaagtagcca cattttatgccaggatgttagaacatgactacacgaccaaggaggtgtttaatcataacttcatgaaggactggagaaag gttatgatccagcaggagaaaaagaagatcaaagatctcagtaagtgtaactttaaggaaatggctgagtatttcaaaca actgagtgaaggaagaaaaaaaccgaacaaaggaggaaaagaagagagtatcgttaacttccgtattgaacctccgggac tgttcaggggttgtggtgaccatccgaagcagggaatgctgaaacgtagaaccatgccggaggatgtcattattaactgt agcaagggttccaaggcacctaaagctccagatggtcataagtggaaggaagttcgccatgataacaaggtatcatggtt ggcatgctggacagacaatctccagttatctacaaagtacatcatactaaacgctgcctccagacttaagcatgaagact ggcagaaatatgagacggcaagaccgttacataagacggtggataaaatccgtgcccagtacagagaggagtggaaatct aaagagatgagaatacggcagagagctgtggcactatactttattgacaagcttgcattgagaacaggtagtgagaaaga agaaggtgaaacagtggacaccgtgggctgttgttctctccgcacggagcacttaactcttcacgaaaaacaccaggacc aggagaatgtggtggagtttgatttccttggtaaagattccattagatattacaacagagtgacggtggaaaaatgcgta ttcaagaaccttcaactctttatggagaacaaatcaggagaagatgaggtctttgacagactgaatacagcaattttgaa caagtatttaaaagagttaatggaagggttgacggcaaaggtgttctgtacctacaatgcctcgcgtacattacaagagc aattaaacttgctcactgaaccggaggacacgatcccagctaagatcttatcctacaatagagctaacagagctgtagcc gttttatgtaaccatcaacgtgctgcacccaaaaacttcagtaaacagatggagaacttacaagtcaagattgatgacaa gaaagccgccatcaaagaagccaagaagctgatgaaggatgccaagtcggattataaaaatcacaaatcagagaaaacaa agagtgccttggagaagagaaagaaagccgtacagagatttgaagaacaactgacaaagttagaagtccaggcaacagat aaggaggagaacaaagagattgctctaggtacctccaaattaaactacttagatcccagaatttctgtagcttggtgcaa gaaatgggaagttccaatagagaagatttacaacaaaatgcagagagagaagttccgatgggctatcgacatggcgacgg cagaatttgaattttga |
|
Protein
| Protein ID | pfu_aug2.0_1052.1_08132.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1052.1_08132.t1 MEVQTARLQQEKAVKRPTESSNNDVLLSSRKGRIVKTEKGSGKSASLSKTPNKTPTNLDKGDKAEESNEVWRWWEEERHD DGVEGTFLEHEKLKPDSAKKRKQLSDDEDDEDYEKKPKKKKKVKSGSGESASPIKTPNKSPTDLDKGDKAEESNKVWRWW EEEEESQDDGVKWTFLEHKGPVFAPDYEPIPKNVKFYYDGEEVKLSQDTEEVATFYARMLEHDYTTKEVFNHNFMKDWRK VMIQQEKKKIKDLSKCNFKEMAEYFKQLSEGRKKPNKGGKEESIVNFRIEPPGLFRGCGDHPKQGMLKRRTMPEDVIINC SKGSKAPKAPDGHKWKEVRHDNKVSWLACWTDNLQLSTKYIILNAASRLKHEDWQKYETARPLHKTVDKIRAQYREEWKS KEMRIRQRAVALYFIDKLALRTGSEKEEGETVDTVGCCSLRTEHLTLHEKHQDQENVVEFDFLGKDSIRYYNRVTVEKCV FKNLQLFMENKSGEDEVFDRLNTAILNKYLKELMEGLTAKVFCTYNASRTLQEQLNLLTEPEDTIPAKILSYNRANRAVA VLCNHQRAAPKNFSKQMENLQVKIDDKKAAIKEAKKLMKDAKSDYKNHKSEKTKSALEKRKKAVQRFEEQLTKLEVQATD KEENKEIALGTSKLNYLDPRISVAWCKKWEVPIEKIYNKMQREKFRWAIDMATAEFEF |
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