Gene
| Gene Model ID | pfu_aug2.0_1036.1_21355 |
|---|---|
| Locus | scaffold1036.1 : 27639 ... 43585 : - |
| To GenomeBrowser | scaffold1036.1:27639..43585 |
| Genes list of scaffold | scaffold1036.1 |
| Synonym | pfu_aug1.0_6672.1_45496 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| conserved oligomeric golgi complex subunit 6 | GO:0006891 GO:0017119 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1036.1_21355.t2 | 3 | 1 | COG6 | 14 | 195 | 0.0 | 415.5 | 0.0 | 0.0 | 201.3 |
| pfu_aug2.0_1036.1_21355.t2 | 3 | 2 | COG6 | 191 | 349 | 0.0 | 415.5 | 0.0 | 0.0 | 184.5 |
| pfu_aug2.0_1036.1_21355.t2 | 3 | 3 | COG6 | 351 | 423 | 0.0 | 415.5 | 1.0e-10 | 9.9e-08 | 30.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1036.1_21355.t2 | gi|531998963|ref|XP_005344019.1| | PREDICTED: conserved oligomeric Golgi complex subunit 6 [Microtus ochrogaster] | 0.0 |
| pfu_aug2.0_1036.1_21355.t2 | gi|744571499|ref|XP_010980719.1| | PREDICTED: conserved oligomeric Golgi complex subunit 6 [Camelus dromedarius] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1036.1_21355.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1036.1_21355.t1 atgacagaacgggagggttctgagcctccttcagcctcctctcaggctgcaaatcctttatcaagaaagctgaacaagat tttggaaacaagaatagacaatgacaaggaaatgttggaagctcttaaagccttgtcctcatttttcacggataacaatt tgaggacccgacgtaacctgagaagtgacatcgagagacgcagcctcagcatcaatgaggatttcttacaaacattccag gcagttaaagagcaactggacagtgtatacagtgatgtaaaagccatgaatgactgctgtcaggatatgacatccagact taaggctgccaaggaacagacacatgacctcataaatcagacaaccaagctacacgctgaaagtcagaaattgcagatga agtcccaagtagctgatgcttttctagataaatttcagctgaaatcagaggaagtgaaatctctacgtggaaatcgtgac ggctcattaagtcaagaattcttccaatctttagataaagtgaagaagatacataatgactgcaaagtattactacgcac caatcagcaaacagctggattggaaattatggaaacaatggccttgcaccaagagtcagcttacgagagactttatcgct gggcacaaaatgagtttggtactgctagaaggacggctgtggtacgtggacttattgatgccctcactaggggaggccct ggtggaacacctcgccctattgaattacattcccatgatcctttgcgatatgttggtgacatgttggcatggttacatca ggctgcggcttcagagaaggaacacctccagtcacttcttaaaaaatgttcagtgaatgaagatcagatccatgacgtat taggacacgtcacagagggagtctgtcgaccattcaaggtgagagtggagcaggtgctggtagcagaacaggatgctgtt acactttataaactacacaatcttctcaagttctaccataatactataggacagatactgagtaaggaggcagctcttct aacaacagtcacagaaatccaggatctcagccatagaatgttctttaacagtctcaactgtcacgctaataaacttctgg acaagggccgatttgacagctaccttgccaatccagactctgtcataataccacagtttggactgatcctaagtggaaga gttagagattccatcaagaaaagagccatagaccttatatgtgaggcatacaagctgatgtatgaggccatatttaaatc aaccaatgaatataaagaaccacaaggaattgttccaagaactcctgatcaagtccacaaactattgtcatag |
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| Transcript ID | pfu_aug2.0_1036.1_21355.t2 |
| Definition | - |
>pfu_aug2.0_1036.1_21355.t2 atgtttaacgatatattgacatgtataacggaaatgttggaagctcttaaagccttgtcctcatttttcacggataacaa tttgaggacccgacgtaacctgagaagtgacatcgagagacgcagcctcagcatcaatgaggatttcttacaaacattcc aggcagttaaagagcaactggacagtgtatacagtgatgtaaaagccatgaatgactgctgtcaggatatgacatccaga cttaaggctgccaaggaacagacacatgacctcataaatcagacaaccaagctacacgctgaaagtcagaaattgcagat gaagtcccaagtagctgatgcttttctagataaatttcagctgaaatcagaggaagtgaaatctctacgtggaaatcgtg acggctcattaagtcaagaattcttccaatctttagataaagtgaagaagatacataatgactgcaaagtattactacgc accaatcagcaaacagctggattggaaattatggaaacaatggccttgcaccaagagtcagcttacgagagactttatcg ctgggcacaaaatgagtttggtactgctagaaggacggctgtggtacgtggacttattgatgccctcactaggggaggcc ctggtggaacacctcgccctattgaattacattcccatgatcctttgcgatatgttggtgacatgttggcatggttacat caggctgcggcttcagagaaggaacacctccagtcacttcttaaaaaatgttcagtgaatgaagatcagatccatgacgt attaggacacgtcacagagggagtctgtcgaccattcaaggtgagagtggagcaggtgctggtagcagaacaggatgctg ttacactttataaactacacaatcttctcaagttctaccataatactataggacagatactgagtaaggaggcagctctt ctaacaacagtcacagaaatccaggatctcagccatagaatgttctttaacagtctcaactgtcacgctaataaacttct ggacaagggccgatttgacagctaccttgccaatccagactctgtcataataccacagtttggactgatcctaagtggaa gagttagagattccatcaagaaaagagccatagaccttatatgtgaggcatacaagctgatgtatgaggccatatttaaa tcaaccaatgaatataaagaaccacaaggaattgttccaagaactcctgatcaagtccacaaactattgtcatag |
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Protein
| Protein ID | pfu_aug2.0_1036.1_21355.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1036.1_21355.t1 MTEREGSEPPSASSQAANPLSRKLNKILETRIDNDKEMLEALKALSSFFTDNNLRTRRNLRSDIERRSLSINEDFLQTFQ AVKEQLDSVYSDVKAMNDCCQDMTSRLKAAKEQTHDLINQTTKLHAESQKLQMKSQVADAFLDKFQLKSEEVKSLRGNRD GSLSQEFFQSLDKVKKIHNDCKVLLRTNQQTAGLEIMETMALHQESAYERLYRWAQNEFGTARRTAVVRGLIDALTRGGP GGTPRPIELHSHDPLRYVGDMLAWLHQAAASEKEHLQSLLKKCSVNEDQIHDVLGHVTEGVCRPFKVRVEQVLVAEQDAV TLYKLHNLLKFYHNTIGQILSKEAALLTTVTEIQDLSHRMFFNSLNCHANKLLDKGRFDSYLANPDSVIIPQFGLILSGR VRDSIKKRAIDLICEAYKLMYEAIFKSTNEYKEPQGIVPRTPDQVHKLLS |
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| Protein ID | pfu_aug2.0_1036.1_21355.t2 |
| Definition | - |
>pfu_aug2.0_1036.1_21355.t2 MFNDILTCITEMLEALKALSSFFTDNNLRTRRNLRSDIERRSLSINEDFLQTFQAVKEQLDSVYSDVKAMNDCCQDMTSR LKAAKEQTHDLINQTTKLHAESQKLQMKSQVADAFLDKFQLKSEEVKSLRGNRDGSLSQEFFQSLDKVKKIHNDCKVLLR TNQQTAGLEIMETMALHQESAYERLYRWAQNEFGTARRTAVVRGLIDALTRGGPGGTPRPIELHSHDPLRYVGDMLAWLH QAAASEKEHLQSLLKKCSVNEDQIHDVLGHVTEGVCRPFKVRVEQVLVAEQDAVTLYKLHNLLKFYHNTIGQILSKEAAL LTTVTEIQDLSHRMFFNSLNCHANKLLDKGRFDSYLANPDSVIIPQFGLILSGRVRDSIKKRAIDLICEAYKLMYEAIFK STNEYKEPQGIVPRTPDQVHKLLS |
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