Gene
| Gene Model ID | pfu_aug2.0_1027.1_24624 |
|---|---|
| Locus | scaffold1027.1 : 161392 ... 172455 : - |
| To GenomeBrowser | scaffold1027.1:161392..172455 |
| Genes list of scaffold | scaffold1027.1 |
| Synonym | pfu_aug1.0_142.1_43504 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1027.1_24624.t1 | 6 | 1 | zf-H2C2_2 | 1 | 21 | 8.4e-25 | 85.7 | 2.0e-08 | 2.1e-05 | 24.5 |
| pfu_aug2.0_1027.1_24624.t1 | 5 | 1 | zf-C2H2 | 10 | 32 | 1.7e-21 | 75.1 | 3.2e-05 | 0.034 | 14.4 |
| pfu_aug2.0_1027.1_24624.t1 | 5 | 1 | zf-C2H2_4 | 10 | 32 | 2.3e-16 | 58.8 | 9.0e-06 | 0.0095 | 16.2 |
| pfu_aug2.0_1027.1_24624.t1 | 6 | 1 | zf-met | 10 | 28 | 1.7e-07 | 31.1 | 0.0092 | 9.8 | 6.5 |
| pfu_aug2.0_1027.1_24624.t1 | 5 | 1 | zf-C2H2_jaz | 10 | 28 | 4.4e-07 | 29.8 | 0.015 | 16.0 | 5.7 |
| pfu_aug2.0_1027.1_24624.t1 | 6 | 2 | zf-met | 100 | 107 | 1.7e-07 | 31.1 | 9.7 | 10000.0 | -3.1 |
| pfu_aug2.0_1027.1_24624.t1 | 6 | 2 | zf-H2C2_2 | 362 | 377 | 8.4e-25 | 85.7 | 0.0015 | 1.6 | 9.1 |
| pfu_aug2.0_1027.1_24624.t1 | 5 | 2 | zf-C2H2 | 366 | 388 | 1.7e-21 | 75.1 | 3.8e-08 | 4.0e-05 | 23.6 |
| pfu_aug2.0_1027.1_24624.t1 | 5 | 2 | zf-C2H2_4 | 366 | 388 | 2.3e-16 | 58.8 | 4.0e-06 | 0.0042 | 17.3 |
| pfu_aug2.0_1027.1_24624.t1 | 6 | 3 | zf-met | 366 | 385 | 1.7e-07 | 31.1 | 3.0e-06 | 0.0032 | 17.6 |
| pfu_aug2.0_1027.1_24624.t1 | 5 | 2 | zf-C2H2_jaz | 366 | 385 | 4.4e-07 | 29.8 | 4.8e-05 | 0.051 | 13.7 |
| pfu_aug2.0_1027.1_24624.t1 | 6 | 3 | zf-H2C2_2 | 380 | 411 | 8.4e-25 | 85.7 | 0.00065 | 0.69 | 10.3 |
| pfu_aug2.0_1027.1_24624.t1 | 5 | 3 | zf-C2H2 | 402 | 424 | 1.7e-21 | 75.1 | 1.0e-05 | 0.011 | 16.0 |
| pfu_aug2.0_1027.1_24624.t1 | 5 | 3 | zf-C2H2_4 | 402 | 424 | 2.3e-16 | 58.8 | 0.00086 | 0.91 | 10.0 |
| pfu_aug2.0_1027.1_24624.t1 | 5 | 3 | zf-C2H2_jaz | 402 | 422 | 4.4e-07 | 29.8 | 1.0e-05 | 0.011 | 15.8 |
| pfu_aug2.0_1027.1_24624.t1 | 6 | 4 | zf-met | 403 | 423 | 1.7e-07 | 31.1 | 1.9e-05 | 0.02 | 15.1 |
| pfu_aug2.0_1027.1_24624.t1 | 6 | 4 | zf-H2C2_2 | 417 | 440 | 8.4e-25 | 85.7 | 4.2e-11 | 4.5e-08 | 32.9 |
| pfu_aug2.0_1027.1_24624.t1 | 5 | 4 | zf-C2H2 | 430 | 452 | 1.7e-21 | 75.1 | 1.3e-07 | 0.00014 | 21.9 |
| pfu_aug2.0_1027.1_24624.t1 | 5 | 4 | zf-C2H2_4 | 430 | 452 | 2.3e-16 | 58.8 | 1.5e-06 | 0.0016 | 18.6 |
| pfu_aug2.0_1027.1_24624.t1 | 6 | 5 | zf-met | 430 | 450 | 1.7e-07 | 31.1 | 0.00013 | 0.14 | 12.4 |
| pfu_aug2.0_1027.1_24624.t1 | 5 | 4 | zf-C2H2_jaz | 430 | 450 | 4.4e-07 | 29.8 | 0.0016 | 1.7 | 8.9 |
| pfu_aug2.0_1027.1_24624.t1 | 6 | 5 | zf-H2C2_2 | 444 | 468 | 8.4e-25 | 85.7 | 1.2e-10 | 1.3e-07 | 31.5 |
| pfu_aug2.0_1027.1_24624.t1 | 5 | 5 | zf-C2H2 | 458 | 481 | 1.7e-21 | 75.1 | 2.9e-07 | 0.00031 | 20.8 |
| pfu_aug2.0_1027.1_24624.t1 | 5 | 5 | zf-C2H2_4 | 458 | 481 | 2.3e-16 | 58.8 | 4.5e-06 | 0.0048 | 17.1 |
| pfu_aug2.0_1027.1_24624.t1 | 5 | 5 | zf-C2H2_jaz | 458 | 478 | 4.4e-07 | 29.8 | 0.41 | 440.0 | 1.2 |
| pfu_aug2.0_1027.1_24624.t1 | 6 | 6 | zf-met | 460 | 477 | 1.7e-07 | 31.1 | 1.1 | 1200.0 | -0.1 |
| pfu_aug2.0_1027.1_24624.t1 | 6 | 6 | zf-H2C2_2 | 472 | 482 | 8.4e-25 | 85.7 | 0.72 | 760.0 | 0.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1027.1_24624.t1 | gi|569005368|ref|XP_006526557.1| | PREDICTED: zinc finger protein 236 isoform X4 [Mus musculus] | 0.0 |
| pfu_aug2.0_1027.1_24624.t1 | gi|558188539|ref|XP_006128919.1| | PREDICTED: zinc finger protein 236 isoform X6 [Pelodiscus sinensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1027.1_24624.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1027.1_24624.t1 atgcgtcttcacactggtgccaaaccgttcaaatgtccacactgcgatcaaagattccgtacgtccggacatcgtaagag tcacgtaatggcacatctaaagccagacgtgccgaagaaacgtaagatgcactttacccacgagcaagagcaaaataatc aacagcagatactggtgaatccatcggacattactcaaggcaacggtcctccaaccataagcattgatccctctatgctt cagtctcagaacatgttaccgatctctttgactgtcgacagcagcgtaggtcagctctccgagagcgccttggcgacaca tgtcctacaaagtctggacggattacagctacaactgacaggaaatctcaacagtcagggcattcagatctccgcgctcg atcccaatatatttgcccaaacggtgcagatcgacgctaatatcctgcagcagttacagcaacaagggaacgttaatatt accatcaatcctaatgttctgagccagtccatacaagcagccgatcctaacctggtgcaaaatatacaggttcagaatgc agtggatccaaatgtggtgatacaaccaatgtcaaccattacggtggaccaacagcagctgatacagatgtctaccaata actcagcacatgacggtgctccaaacgcattcgttgtcaccgcagacggtaatctggcaacagaccaaaatataacagtg acacctggtgacctacagggtgttgatggtatggtacccagccaatcagatctgccggaagccagcatccagcacgacct tcctgagcccatcgaacctagtcaactcaatacgacaccagacgaaatcgtagacgatgatgaagatgatgatgatttag atgatctgatagaggatgaagatgaggaagcagaacatttgggatcggtggaagaggaaaactcgggcttgctgccagag aatgatataacggaaggagaggacaatttgacacatggcaatgagtcggcaaatataagtctgagtgatgcagtgcaggc aatgggggcggcagcttctggtagtgtcgacaaatttaacgatccggagaggacgtttgtttgtggggtgtgtaataaag cattcaagcgggccagtcaccttaaggagcacttgttcatacacgatcctaaaaacgcccctaaatcggataaaccgcac atacacaagtgtatggcgtgtaataaagcgttccagaaaccaagtcagctgcagaggcactatagaatacacacaggtga gaggccgtttgtgtgtaacatctgttccaaagctttcaaccaaaagaacgcactgaacattcacttaaagaagcacacgg gagagagaccacacaagtgttcgtactgcacattgtcgttctcgcagaaggggaacctcaagacgcacatcaaacgggcc catcacatggatatggtgcaaagcatgaacttgccaaagttatacgtgccggctagcggtgccaatataaatatagccgg cggtgacgatggcgccacccaagactccgcggtaaatgaggaaggggagataaatctggaagaagtggcggcagatttat ttccgcaggataaaatgtttatgtcccctgaaggaggtactgcataa |
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Protein
| Protein ID | pfu_aug2.0_1027.1_24624.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1027.1_24624.t1 MRLHTGAKPFKCPHCDQRFRTSGHRKSHVMAHLKPDVPKKRKMHFTHEQEQNNQQQILVNPSDITQGNGPPTISIDPSML QSQNMLPISLTVDSSVGQLSESALATHVLQSLDGLQLQLTGNLNSQGIQISALDPNIFAQTVQIDANILQQLQQQGNVNI TINPNVLSQSIQAADPNLVQNIQVQNAVDPNVVIQPMSTITVDQQQLIQMSTNNSAHDGAPNAFVVTADGNLATDQNITV TPGDLQGVDGMVPSQSDLPEASIQHDLPEPIEPSQLNTTPDEIVDDDEDDDDLDDLIEDEDEEAEHLGSVEEENSGLLPE NDITEGEDNLTHGNESANISLSDAVQAMGAAASGSVDKFNDPERTFVCGVCNKAFKRASHLKEHLFIHDPKNAPKSDKPH IHKCMACNKAFQKPSQLQRHYRIHTGERPFVCNICSKAFNQKNALNIHLKKHTGERPHKCSYCTLSFSQKGNLKTHIKRA HHMDMVQSMNLPKLYVPASGANINIAGGDDGATQDSAVNEEGEINLEEVAADLFPQDKMFMSPEGGTA |
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