Gene
| Gene Model ID | pfu_aug1.0_9928.1_46123 |
|---|---|
| Locus | scaffold9928.1 : 1226 ... 23965 : + |
| To GenomeBrowser | scaffold9928.1:1226..23965 |
| Genes list of scaffold | scaffold9928.1 |
| Synonym | pfu_aug2.0_2462.1_08878 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_9928.1_46123.t1 | 1 | 1 | Transglut_N | 64 | 123 | 3.6e-06 | 26.9 | 1.0e-09 | 7.6e-06 | 25.9 |
| pfu_aug1.0_9928.1_46123.t1 | 1 | 1 | Transglut_core | 237 | 330 | 3.0e-16 | 59.6 | 8.3e-20 | 6.2e-16 | 58.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_9928.1_46123.t1 | gi|260820646|ref|XP_002605645.1| | hypothetical protein BRAFLDRAFT_97108 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
| mantle | 2 |
Transcript
| Transcript ID | pfu_aug1.0_9928.1_46123.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9928.1_46123.t1 atgcctaggtcgagatttccaggtttgagtccatactctacctttagatggtcaaggcacagggggcgacgatcgagaaa tcgtcgtggaagatttggatttggtgctatgtttggttcactgccagatatagaggaaatcaatgccaccgttgaacacg tggacgaatcggaggaagacgatacacagggtgatcgacctttgcccacggacaatactatcgtgcatatgaaggtatct gacaaggacatcgaagggaaatggcaagctaagttcccagatcctcttcccaaggagaatcgtgtctcactcaccatcac tacgccacctgattgtattgtcggaaaatgggctttccacgtcgccgtgctggagaaaagggacggtaaaaccgttatag tgaagaatgacagaaaggctaaagatgtttacgtcttgttcaatccttggaataaagatgaccaagtatacatgtcagac gaggaatggagaaacgagtatgtgatgaatgagaatggctatgttttcgttggaagtcaaagaagtcaaagagcaaggcc ctggatttttggtcagacgaatagtttggatcaggaagatgaaaaaggatgtcttgttggaaattggagtggtaaatatg acgatggtacatcacccaccgcgtggataggaagtgtgaagattctacaagagtatttcagagaaaggagatcagtttgc tacggccagtgctgggttttctctggagtctttacaacactatgccgtacattgggtattcccacaagaagtattaccaa cttttcttcggctcacaacacggacatgggtgataataccatcgatacctatgtctttgatgatggagaggactgtgact tcctgaataacgactcagtttggaattttcacgtatggaatgaagtctactttgcaagaccggacttaactgcgggaaaa aactacgggggttggcaagcctgtgacgccacgccacaagaacgaagcaatggtatcttccagtgtggacctatgccagt ggcagccattaaacagggggacataaatgaaggatatgacggctcttttattatggctgaagttaatgcagacagaatta catggactgtcaacagagctgactttacaccaagcaatccgattataaattcctatgggtaa |
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Protein
| Protein ID | pfu_aug1.0_9928.1_46123.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_9928.1_46123.t1 MPRSRFPGLSPYSTFRWSRHRGRRSRNRRGRFGFGAMFGSLPDIEEINATVEHVDESEEDDTQGDRPLPTDNTIVHMKVS DKDIEGKWQAKFPDPLPKENRVSLTITTPPDCIVGKWAFHVAVLEKRDGKTVIVKNDRKAKDVYVLFNPWNKDDQVYMSD EEWRNEYVMNENGYVFVGSQRSQRARPWIFGQTNSLDQEDEKGCLVGNWSGKYDDGTSPTAWIGSVKILQEYFRERRSVC YGQCWVFSGVFTTLCRTLGIPTRSITNFSSAHNTDMGDNTIDTYVFDDGEDCDFLNNDSVWNFHVWNEVYFARPDLTAGK NYGGWQACDATPQERSNGIFQCGPMPVAAIKQGDINEGYDGSFIMAEVNADRITWTVNRADFTPSNPIINSYG |
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