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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_9303.1_53327
Locus scaffold9303.1 : 657 ... 17735 : -
To GenomeBrowser scaffold9303.1:657..17735
Genes list of scaffold scaffold9303.1
Synonym pfu_aug2.0_830.1_01173

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_9303.1_53327.t1 3 1 Calpain_III 84 112 3.3e-28 98.1 0.2 720.0 -0.3
pfu_aug1.0_9303.1_53327.t1 3 2 Calpain_III 131 259 3.3e-28 98.1 3.9e-22 1.5e-18 66.8
pfu_aug1.0_9303.1_53327.t1 3 3 Calpain_III 284 322 3.3e-28 98.1 9.3e-11 3.4e-07 29.9

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 1
>Adult tissues
Dshape 1

Transcript
Transcript IDpfu_aug1.0_9303.1_53327.t1
Definition-
>pfu_aug1.0_9303.1_53327.t1
atggggtgtggggcctcatctgatacccactctggcccggagtatggacaatattcaacatttggatacaacggaaatgt
tacccaaaacaatacaaaaactgaagacaacaaaaaggccgccgcgccgacggacgaaactatctacggagagaacattg
atttcactgatgatcaaaaacgcttagaagagctcaagcgtcaacaagatgcacaggatgataatgcgcgtgcgcaggat
aaagaagaccgacctcacgatgcggctatagccgccgctctcattgcacgtcaacaacaggaagaggaagaaaggaggag
ggaggaagaagagcgaagacggaaggagcaggagagaattgaggcagaaaacaaaagacgctatgtggccagtatttatg
gacagtggaagggggaggaagctgcaggtttccaaaagaaaatccagaatcctaaatactccttccgcgttggaaacgat
tgtgctgacatggagggaaaggtacctatagttgttcaaataattcagcgcacaaagaagaggaaagctaaccacccatc
tatacgctgtgatttatataaggttctaaacagagattcaaatgatcaaattgtggtcatggcattaggtaaggatagga
cgacctaccgttcagacatgcaggtttgttaccggttccaggtgtcaccaggggaatattgtgccgtcccgtccacgatt
gaaggaggaatagagaaggaattcatgataagagtcttcacaagtgggcctatatcagatatcaggcacatagatagcga
cctgaccattcaagagctcacagactcgcctgatccgtgcttagaatgtagccagtgtttggttggacaatggattagcg
gccagaatgctggtggtcaagtgtcaaggcagacattccatacaaaccctcagttccatatcgatgtaccaaatcacggt
gagtacgatgtcatctgtagaataaggcattccgatttacgctattaa

Protein
Protein IDpfu_aug1.0_9303.1_53327.t1
Definition-
>pfu_aug1.0_9303.1_53327.t1
MGCGASSDTHSGPEYGQYSTFGYNGNVTQNNTKTEDNKKAAAPTDETIYGENIDFTDDQKRLEELKRQQDAQDDNARAQD
KEDRPHDAAIAAALIARQQQEEEERRREEEERRRKEQERIEAENKRRYVASIYGQWKGEEAAGFQKKIQNPKYSFRVGND
CADMEGKVPIVVQIIQRTKKRKANHPSIRCDLYKVLNRDSNDQIVVMALGKDRTTYRSDMQVCYRFQVSPGEYCAVPSTI
EGGIEKEFMIRVFTSGPISDIRHIDSDLTIQELTDSPDPCLECSQCLVGQWISGQNAGGQVSRQTFHTNPQFHIDVPNHG
EYDVICRIRHSDLRY

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