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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_9145.1_09899
Locus scaffold9145.1 : 6242 ... 31115 : -
To GenomeBrowser scaffold9145.1:6242..31115
Genes list of scaffold scaffold9145.1
Synonym pfu_aug2.0_1281.1_04936

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_9145.1_09899.t1 1 1 ADH_zinc_N 31 82 4.6e-07 29.4 1.1e-10 8.4e-07 28.6
pfu_aug1.0_9145.1_09899.t1 1 1 ADH_N 72 153 4.3e-21 74.7 8.1e-25 6.0e-21 74.2

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_9145.1_09899.t1 gi|237681130|ref|NP_001153710.1| formaldehyde dehydrogenase [Tribolium castaneum] 3.0e-22

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 2
egg-4cell 1
8-16cell 1
egg-Dshape 1
trochophore 1
>Adult tissues
Dshape 1
adductorMuscle 1
maleGonad 1
mantle 1
mantlePallium 1
pearlSac 1

Transcript
Transcript IDpfu_aug1.0_9145.1_09899.t1
Definition-
>pfu_aug1.0_9145.1_09899.t1
atgggacaggttcattcccgccttgccacaagtcctacatcaaccaaacttgcatggatgattcttctgaggatgcttac
tacaatgcatgcaaaacagtttggaatgacagattttgtgaatcctaagaaatatgacaaaccaatacaacaagtgctag
tagaaatgacagatggtggactggactatacatttgaatgcattgggaatatagcaacaatgatgacacattcaagtatc
tgtcgttcagacctgtttggtttggctaaactgtcgcctttcacactgtttcccatcgtcctaggacatgaaggaagtgg
tatcgtggagagtgtaggggaaggagttgaaaaccttcagccaggcgaccacgtgataccagtatttgttccacagtgca
acgaatgtcgtgcttgcaaatgcaagaaaaccaacttatgtgatgcatattcattcaccgcaaatgacggtcgaaatatg
tgttatcaataa

Protein
Protein IDpfu_aug1.0_9145.1_09899.t1
Definition-
>pfu_aug1.0_9145.1_09899.t1
MGQVHSRLATSPTSTKLAWMILLRMLTTMHAKQFGMTDFVNPKKYDKPIQQVLVEMTDGGLDYTFECIGNIATMMTHSSI
CRSDLFGLAKLSPFTLFPIVLGHEGSGIVESVGEGVENLQPGDHVIPVFVPQCNECRACKCKKTNLCDAYSFTANDGRNM
CYQ

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