Gene
| Gene Model ID | pfu_aug1.0_913.1_43843 |
|---|---|
| Locus | scaffold913.1 : 1 ... 16365 : - |
| To GenomeBrowser | scaffold913.1:1..16365 |
| Genes list of scaffold | scaffold913.1 |
| Synonym | pfu_aug2.0_1612.1_08472 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_913.1_43843.t1 | 4 | 1 | LRR_6 | 314 | 329 | 1.7e-15 | 55.2 | 0.00056 | 1.7 | 8.9 |
| pfu_aug1.0_913.1_43843.t1 | 4 | 2 | LRR_6 | 335 | 356 | 1.7e-15 | 55.2 | 2.6e-06 | 0.0078 | 16.1 |
| pfu_aug1.0_913.1_43843.t1 | 3 | 1 | LRR_1 | 338 | 350 | 1.3e-06 | 27.5 | 0.0017 | 4.9 | 7.5 |
| pfu_aug1.0_913.1_43843.t1 | 4 | 3 | LRR_6 | 365 | 385 | 1.7e-15 | 55.2 | 1.1e-05 | 0.034 | 14.2 |
| pfu_aug1.0_913.1_43843.t1 | 3 | 2 | LRR_1 | 366 | 379 | 1.3e-06 | 27.5 | 0.00085 | 2.5 | 8.4 |
| pfu_aug1.0_913.1_43843.t1 | 4 | 4 | LRR_6 | 394 | 414 | 1.7e-15 | 55.2 | 1.4e-06 | 0.0042 | 16.9 |
| pfu_aug1.0_913.1_43843.t1 | 3 | 3 | LRR_1 | 394 | 405 | 1.3e-06 | 27.5 | 0.0034 | 10.0 | 6.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_913.1_43843.t1 | gi|260799079|ref|XP_002594527.1| | hypothetical protein BRAFLDRAFT_124994 [Branchiostoma floridae] | 9.99995e-41 |
Transcript
| Transcript ID | pfu_aug1.0_913.1_43843.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_913.1_43843.t1 atggcgagcatgtttgaacagaatacagccaaagattttggtcctcgacaaaataaaacagttaataggtttgttactga ccgtccatgtctttgccttgccttttatcggcttgatcaacccaacaaatctctgtacacgaagctgctagttaacatgg aaaatctagaggacagtgttgagtctatagaactggaaaatcctccagcaaaccatcgtagctttatacgtccccactct gcaaaaccaaagaaatctgacgaccattcagagtccaagtccccagagccacaactgacaaggactctcagaccatggac cgcaaatccaaaaacgagagctgctgtctccaaaaagaagatagtgcgtcaaaatctaaggaaatctcacatgcgacctc ccagcaggtcgtcaaaatctgggtcagtctcgcccacatcaacttctaccactgatcaagctctcactgttgtcggcata gagaatgcggatctggcctatactccacgtgtatatcatctacccagagatgacgagcctgaagttggaggtatcctaga ggagggcgttagaactctaatatcagagaggataagtggagtagagagtccagtccaggagagttgggccctcacccaga tgaacgatgtgccagacacaccggacaaagataagaaaccacaccctaacgtagacacgtgggtgatgggatcccctcat gactctgatgagtatgatacagacttagaagtggacatgatgaaaaaggaggagagagccatagatcctacaggacagac ggcttaccaagatcaatgtaaacgtcaaggtttagttcccgtgtcttacttagccagacaccttggggacaggaacttac ggatgcgtcatcattacattggtggcccagcaacaaagcctattgcaagggccttagaggatatatcaaacaattttatt ggaactccaggtgccagggccatagcagatatgttagagtataactcaaccttaaaatctttaaatttatcagccaatca gctcactgatagagatgccagatattttatagaagcattaaaagccaacatctgcttgacttcattagatttgagtaata atgagtttggagaattaggtggcatatatcttggaggtgctttgacttttaatgaaggtttgacagaattagatctgagt tggaattccataagaaacaaaggggcagaggcaattgccaaggctttatcg |
|
Protein
| Protein ID | pfu_aug1.0_913.1_43843.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_913.1_43843.t1 MASMFEQNTAKDFGPRQNKTVNRFVTDRPCLCLAFYRLDQPNKSLYTKLLVNMENLEDSVESIELENPPANHRSFIRPHS AKPKKSDDHSESKSPEPQLTRTLRPWTANPKTRAAVSKKKIVRQNLRKSHMRPPSRSSKSGSVSPTSTSTTDQALTVVGI ENADLAYTPRVYHLPRDDEPEVGGILEEGVRTLISERISGVESPVQESWALTQMNDVPDTPDKDKKPHPNVDTWVMGSPH DSDEYDTDLEVDMMKKEERAIDPTGQTAYQDQCKRQGLVPVSYLARHLGDRNLRMRHHYIGGPATKPIARALEDISNNFI GTPGARAIADMLEYNSTLKSLNLSANQLTDRDARYFIEALKANICLTSLDLSNNEFGELGGIYLGGALTFNEGLTELDLS WNSIRNKGAEAIAKALS |
|