Gene
| Gene Model ID | pfu_aug1.0_8847.1_45946 |
|---|---|
| Locus | scaffold8847.1 : 1 ... 4935 : - |
| To GenomeBrowser | scaffold8847.1:1..4935 |
| Genes list of scaffold | scaffold8847.1 |
| Synonym | pfu_aug2.0_99.1_30212 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_8847.1_45946.t1 | 15 | 1 | Plectin | 13 | 40 | 0.0 | 198.7 | 3.7e-08 | 0.00018 | 20.9 |
| pfu_aug1.0_8847.1_45946.t1 | 15 | 2 | Plectin | 46 | 62 | 0.0 | 198.7 | 0.24 | 1200.0 | -0.9 |
| pfu_aug1.0_8847.1_45946.t1 | 15 | 3 | Plectin | 93 | 115 | 0.0 | 198.7 | 1.8e-06 | 0.0091 | 15.4 |
| pfu_aug1.0_8847.1_45946.t1 | 15 | 4 | Plectin | 122 | 143 | 0.0 | 198.7 | 4.3e-07 | 0.0021 | 17.5 |
| pfu_aug1.0_8847.1_45946.t1 | 15 | 5 | Plectin | 206 | 230 | 0.0 | 198.7 | 2.7e-05 | 0.13 | 11.7 |
| pfu_aug1.0_8847.1_45946.t1 | 15 | 6 | Plectin | 238 | 262 | 0.0 | 198.7 | 6.1e-05 | 0.3 | 10.6 |
| pfu_aug1.0_8847.1_45946.t1 | 15 | 7 | Plectin | 285 | 310 | 0.0 | 198.7 | 5.1e-09 | 2.5e-05 | 23.6 |
| pfu_aug1.0_8847.1_45946.t1 | 15 | 8 | Plectin | 312 | 336 | 0.0 | 198.7 | 0.0093 | 46.0 | 3.6 |
| pfu_aug1.0_8847.1_45946.t1 | 15 | 9 | Plectin | 335 | 360 | 0.0 | 198.7 | 0.00092 | 4.5 | 6.8 |
| pfu_aug1.0_8847.1_45946.t1 | 15 | 10 | Plectin | 398 | 410 | 0.0 | 198.7 | 0.026 | 130.0 | 2.2 |
| pfu_aug1.0_8847.1_45946.t1 | 15 | 11 | Plectin | 417 | 447 | 0.0 | 198.7 | 4.8e-06 | 0.024 | 14.1 |
| pfu_aug1.0_8847.1_45946.t1 | 15 | 12 | Plectin | 474 | 492 | 0.0 | 198.7 | 9.0e-07 | 0.0045 | 16.4 |
| pfu_aug1.0_8847.1_45946.t1 | 15 | 13 | Plectin | 514 | 523 | 0.0 | 198.7 | 0.083 | 410.0 | 0.5 |
| pfu_aug1.0_8847.1_45946.t1 | 15 | 14 | Plectin | 524 | 545 | 0.0 | 198.7 | 9.4e-12 | 4.7e-08 | 32.4 |
| pfu_aug1.0_8847.1_45946.t1 | 15 | 15 | Plectin | 580 | 605 | 0.0 | 198.7 | 0.00067 | 3.3 | 7.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_8847.1_45946.t1 | gi|339248781|ref|XP_003373378.1| | putative calponin y domain protein [Trichinella spiralis] | 8.0e-28 |
Transcript
| Transcript ID | pfu_aug1.0_8847.1_45946.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8847.1_45946.t1 atgagaaatacattagaaagtcagactttcccagttgctggggtgatcgaccctcgaacaggagaatggatcggagtgaa agaagctcttactgcgggaattctagatcaaaggacgaataaatataaaaacattgtgaccggcgaggaactagatttcc ttgaagcagtgaaaaatggatatttaattgttgatcccaattccctcgatgaaatggaagaagaaggttgctttactttc gttgatttcgcagactcaggttttcgtgcaaattctgtggttgatccaacgacgggagaagaaatttcttatcaacgtgc cataaaagatggagttattgaccctagaaatggggtttataggaaccctcatacaggggagactatttcgttggaaagtg caatacggcaaggtttgatcaagggtcaatttttacaacctggagaagatgatcagggggaggatgtgttctttattaaa cagcttcaagtgaagaagcagaagttcattcctggggagggaaaaggaatggatggtgcaggtgctatcaaacaagatcc gaattctgcaatgtatgataaagttcggaatcatcttgatccggcaaaaagctcggtactagatccgaatgacattacca ctatttcgcttgaagaagcttttgatagaggtatcatagattttgccacttgtgaattcaagatacctgacggtgaaact ttaacgcttgaacaagcagctacgagaaactttattgaaccggaacttttgcgggatattttacaagcatacaaggattc tagcttaggagaattagtagactctggaaaattagatcctgaaacctctcttgtcacagatcctgcaactggacacacaa tgtcgttggaatcggccatcgcccaaaaacttgttgatccagatctgttatacatttatgacgtcccatcacaaaagctt gtaacgctagcatctgcaatgaaaaatggacagtatgatccttccacaggtaaattcagaaaccctaaaactggtgaaat gttatcccttgctgaagcggaaaaatctggaattgtcagaactcatattgatccggagaaaatggcccaaacagcaaaaa cattggaaagacttcagaaattaatggataccaaaattccagcatcaaaatcagaatcttctgctaatgctatgactgtt gaagaagccattaaatctggtgctctggatttacaaaatggattattcacagatctggattcaggagaaattatacccat ttctgaggcaatccgattggaacggattgatccaacagctgcaaagtcattgttagaagcgatggataaattatcaatgc aggatcttatgcagaagggattgattaatccgaaaactggattattttgcccggaagataaatctaagccaatttccata gatgaggcaatcaaacgtggattaataaatccggaaaatgtcttcttagtcgacaaagggaatgataatatagtttctct ggattctttgattaaatccggacttttcgatccaaaaactggacagtatattgatccaaatactggtgagaaaatgtctc ttgaagaagccgtcaagagaggattgattgatctaaatatagatccggaactatttatagattctagtcgcacactgaaa gatttgatagattctagcaaagtcagtccacgatcgactaattttgttgcccctaatgaccacaagatgtcactaagaga tgcattagccaatggatttttaacgatgaattctaaagtgaaacttaatgaggaggggaatgtagtgctcgtgtctgacg aggaagttgtacaatgtctagtggacatcaaggagaattctgattggatgacaggtcgaagtgctctttga |
|
Protein
| Protein ID | pfu_aug1.0_8847.1_45946.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8847.1_45946.t1 MRNTLESQTFPVAGVIDPRTGEWIGVKEALTAGILDQRTNKYKNIVTGEELDFLEAVKNGYLIVDPNSLDEMEEEGCFTF VDFADSGFRANSVVDPTTGEEISYQRAIKDGVIDPRNGVYRNPHTGETISLESAIRQGLIKGQFLQPGEDDQGEDVFFIK QLQVKKQKFIPGEGKGMDGAGAIKQDPNSAMYDKVRNHLDPAKSSVLDPNDITTISLEEAFDRGIIDFATCEFKIPDGET LTLEQAATRNFIEPELLRDILQAYKDSSLGELVDSGKLDPETSLVTDPATGHTMSLESAIAQKLVDPDLLYIYDVPSQKL VTLASAMKNGQYDPSTGKFRNPKTGEMLSLAEAEKSGIVRTHIDPEKMAQTAKTLERLQKLMDTKIPASKSESSANAMTV EEAIKSGALDLQNGLFTDLDSGEIIPISEAIRLERIDPTAAKSLLEAMDKLSMQDLMQKGLINPKTGLFCPEDKSKPISI DEAIKRGLINPENVFLVDKGNDNIVSLDSLIKSGLFDPKTGQYIDPNTGEKMSLEEAVKRGLIDLNIDPELFIDSSRTLK DLIDSSKVSPRSTNFVAPNDHKMSLRDALANGFLTMNSKVKLNEEGNVVLVSDEEVVQCLVDIKENSDWMTGRSAL |
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