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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_8442.1_17305
Locus scaffold8442.1 : 28006 ... 29757 : +
To GenomeBrowser scaffold8442.1:28006..29757
Genes list of scaffold scaffold8442.1
Synonym pfu_aug2.0_3091.1_05746

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_8442.1_17305.t1 1 1 Reo_sigmaC 26 125 6.2e-07 28.8 3.5e-09 7.4e-07 28.6
pfu_aug1.0_8442.1_17305.t1 2 1 Laminin_II 26 80 2.8e-06 27.1 0.00012 0.026 14.2
pfu_aug1.0_8442.1_17305.t1 1 1 MCPsignal 34 128 2.2e-07 30.6 1.3e-09 2.9e-07 30.2
pfu_aug1.0_8442.1_17305.t1 2 2 Laminin_II 75 131 2.8e-06 27.1 3.4e-06 0.00074 19.2

Transcript
Transcript IDpfu_aug1.0_8442.1_17305.t1
Definition-
>pfu_aug1.0_8442.1_17305.t1
atgatagatgaacttaaaaaccgcttgatggatcctgttgagcttagggaactcaggaacttgataatagaccaaaaaag
gttcacagatctggaagcggatgtttcaaatttagcggatgatttgaatcaaacaagacatgaagtggcacagatatcca
ccagtgttatcgaggcaactgagaaagtgacccagatatctgccagtgtgattgagacaactgagaaagtgacccagata
tctgccagtgtgagtgagacaacggagaaagtcacccagatatctgccagtgtgagcgagacaacagagaaaatgactca
gatatctgccagtgtgagcgagacaactgagaaagtgactcagataaaggatcaaactcagagggaactatcacaaatga
agggtttgtataacaaacgatag

Protein
Protein IDpfu_aug1.0_8442.1_17305.t1
Definition-
>pfu_aug1.0_8442.1_17305.t1
MIDELKNRLMDPVELRELRNLIIDQKRFTDLEADVSNLADDLNQTRHEVAQISTSVIEATEKVTQISASVIETTEKVTQI
SASVSETTEKVTQISASVSETTEKMTQISASVSETTEKVTQIKDQTQRELSQMKGLYNKR

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