Gene
| Gene Model ID | pfu_aug1.0_83.1_50615 |
|---|---|
| Locus | scaffold83.1 : 49826 ... 63798 : + |
| To GenomeBrowser | scaffold83.1:49826..63798 |
| Genes list of scaffold | scaffold83.1 |
| Synonym | pfu_aug2.0_259.1_30515 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_83.1_50615.t1 | 2 | 1 | PseudoU_synth_1 | 77 | 200 | 1.5e-29 | 102.4 | 3.7e-15 | 2.8e-11 | 43.7 |
| pfu_aug1.0_83.1_50615.t1 | 2 | 2 | PseudoU_synth_1 | 225 | 323 | 1.5e-29 | 102.4 | 5.6e-19 | 4.1e-15 | 56.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_83.1_50615.t1 | gi|109109191|ref|XP_001111887.1| | PREDICTED: tRNA pseudouridine synthase 3 [Macaca mulatta] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_83.1_50615.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_83.1_50615.t1 atgatatttttagtaaaacatgaagatgaagcagattttttcctatgtcaaatcgattcagttcagcacaacaaggatct catcaacagagtgaggcagttggaatcacacgtgaaacagctcagaaatgttgtactcaaaggccagggcgaaaatcagg ccaggaaaaaggccaaaggccgagaattcgacttcaaaaagtacaacacgagacatgtggctttaaagatcctgtacatg ggttgggattaccatggatttgctgtacaagaggagacagagaaaaccatcgaggctgccctctttgatgcactgctcaa aactaagctcattgagtccagagaaacttcaaactaccatagatgtgggagaacagacaaaggtgtcagtgcttttggtc aggttatatccattgacctccgctcaaatctgctagaggggccaggggtcaaggtcagagagggaggttcagctcatgag agatcaggtgacaagaccactgagattcgatactgtcatatactcaacaaagtgcttcctccagaaatacgctgtctggc ttgggtgccggtcaacgtagattttagtgctagatttgactgcaagaaaaggacatataaatattacttccctaaagcta acttggatctcaaattaatgcaggatgctgcctgtaagctgatcggtgaacatgatttccggaatctatgtaaaatggac gtaggaaatggagtgaccaattataaacggaggataatctcagcagaaataaacaccgtcggtgaattcacgggtggtta tcagatgtgtgaattgacgatagtcggtatggcattcctctggcatcagatacgttgtattgtctcagtgttgttcatgg ttggtcaaggcaaagaaaggccggagatcatagaagagttactagacatagaaaggttgccaaggaaaccacagtataca atggcttctgattggcatgaggagaatataaagcatctacaacaactttgggcacagcacgctgtaaaagctcagatgtt aaagagcatactagatgagatggacaaagctaaggttgaaacagattgtgatatagcaccatgggcagatttgtgtggac ctgtttataaccaatcagaatggatcattccagctcgtactaaagtccataaaccgttactggacagacagacatgtgaa tctctagaggaaagaatggagcattttgccaagaggaggaaaacatcgcatccacaacaggaagtagaacagacatga |
|
Protein
| Protein ID | pfu_aug1.0_83.1_50615.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_83.1_50615.t1 MIFLVKHEDEADFFLCQIDSVQHNKDLINRVRQLESHVKQLRNVVLKGQGENQARKKAKGREFDFKKYNTRHVALKILYM GWDYHGFAVQEETEKTIEAALFDALLKTKLIESRETSNYHRCGRTDKGVSAFGQVISIDLRSNLLEGPGVKVREGGSAHE RSGDKTTEIRYCHILNKVLPPEIRCLAWVPVNVDFSARFDCKKRTYKYYFPKANLDLKLMQDAACKLIGEHDFRNLCKMD VGNGVTNYKRRIISAEINTVGEFTGGYQMCELTIVGMAFLWHQIRCIVSVLFMVGQGKERPEIIEELLDIERLPRKPQYT MASDWHEENIKHLQQLWAQHAVKAQMLKSILDEMDKAKVETDCDIAPWADLCGPVYNQSEWIIPARTKVHKPLLDRQTCE SLEERMEHFAKRRKTSHPQQEVEQT |
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