Gene
| Gene Model ID | pfu_aug1.0_8290.1_09726 |
|---|---|
| Locus | scaffold8290.1 : 5236 ... 12272 : + |
| To GenomeBrowser | scaffold8290.1:5236..12272 |
| Genes list of scaffold | scaffold8290.1 |
| Synonym | pfu_aug2.0_23.1_10097 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_8290.1_09726.t1 | 1 | 1 | DHDPS | 1 | 96 | 1.4e-21 | 76.3 | 1.0e-25 | 1.5e-21 | 76.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_8290.1_09726.t1 | gi|297747348|ref|NP_001177098.1| | probable 4-hydroxy-2-oxoglutarate aldolase, mitochondrial [Sus scrofa] | 4.0e-27 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_8290.1_09726.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8290.1_09726.t1 atgacccagaagatggctgatgtaggagcgaaagccgtattggttgtcaccccttgttattataaagggggcatgtcaaa tgatgcgctggtacaccatttctcagtggttgcagaccatagccccatccctgttatattatatagtgtacctagtaata caaccatagacctggcaccagaagtcatcattagattgtctgagcatcccaacatcataggcctcaaagatagcggtgga gacgtaccaattttcgtcattttcgtcagtgccttccatgacgaaattacgtactga |
|
Protein
| Protein ID | pfu_aug1.0_8290.1_09726.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8290.1_09726.t1 MTQKMADVGAKAVLVVTPCYYKGGMSNDALVHHFSVVADHSPIPVILYSVPSNTTIDLAPEVIIRLSEHPNIIGLKDSGG DVPIFVIFVSAFHDEITY |
|