Gene
| Gene Model ID | pfu_aug1.0_8193.1_67819 |
|---|---|
| Locus | scaffold8193.1 : 486 ... 19117 : + |
| To GenomeBrowser | scaffold8193.1:486..19117 |
| Genes list of scaffold | scaffold8193.1 |
| Synonym | pfu_aug2.0_589.1_30949 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_8193.1_67819.t1 | 3 | 1 | Ig_2 | 23 | 118 | 4.9e-13 | 49.0 | 1.1e-11 | 2.4e-08 | 33.9 |
| pfu_aug1.0_8193.1_67819.t1 | 3 | 1 | Ig_3 | 27 | 105 | 1.3e-10 | 41.5 | 1.5e-08 | 3.2e-05 | 24.3 |
| pfu_aug1.0_8193.1_67819.t1 | 3 | 1 | ig | 41 | 162 | 7.3e-08 | 32.4 | 1.4e-06 | 0.003 | 17.6 |
| pfu_aug1.0_8193.1_67819.t1 | 3 | 1 | V-set | 41 | 116 | 2.7e-07 | 30.4 | 0.0051 | 11.0 | 5.9 |
| pfu_aug1.0_8193.1_67819.t1 | 3 | 1 | I-set | 53 | 112 | 1.0e-11 | 44.4 | 3.3e-07 | 0.00069 | 19.4 |
| pfu_aug1.0_8193.1_67819.t1 | 3 | 2 | Ig_3 | 143 | 162 | 1.3e-10 | 41.5 | 0.04 | 85.0 | 3.7 |
| pfu_aug1.0_8193.1_67819.t1 | 3 | 2 | I-set | 144 | 172 | 1.0e-11 | 44.4 | 6.3e-05 | 0.13 | 12.0 |
| pfu_aug1.0_8193.1_67819.t1 | 3 | 2 | V-set | 144 | 165 | 2.7e-07 | 30.4 | 6.1e-06 | 0.013 | 15.3 |
| pfu_aug1.0_8193.1_67819.t1 | 3 | 2 | Ig_2 | 147 | 168 | 4.9e-13 | 49.0 | 0.005 | 11.0 | 6.2 |
| pfu_aug1.0_8193.1_67819.t1 | 3 | 3 | Ig_3 | 243 | 287 | 1.3e-10 | 41.5 | 0.00059 | 1.2 | 9.6 |
| pfu_aug1.0_8193.1_67819.t1 | 3 | 3 | I-set | 265 | 301 | 1.0e-11 | 44.4 | 0.00059 | 1.3 | 8.9 |
| pfu_aug1.0_8193.1_67819.t1 | 3 | 3 | V-set | 266 | 289 | 2.7e-07 | 30.4 | 0.0042 | 9.0 | 6.2 |
| pfu_aug1.0_8193.1_67819.t1 | 3 | 2 | ig | 267 | 286 | 7.3e-08 | 32.4 | 0.013 | 27.0 | 4.9 |
| pfu_aug1.0_8193.1_67819.t1 | 3 | 3 | Ig_2 | 274 | 302 | 4.9e-13 | 49.0 | 0.016 | 34.0 | 4.6 |
| pfu_aug1.0_8193.1_67819.t1 | 2 | 1 | fn3 | 309 | 385 | 3.1e-21 | 75.2 | 3.7e-16 | 7.8e-13 | 48.3 |
| pfu_aug1.0_8193.1_67819.t1 | 3 | 3 | ig | 340 | 367 | 7.3e-08 | 32.4 | 0.11 | 230.0 | 1.9 |
| pfu_aug1.0_8193.1_67819.t1 | 2 | 2 | fn3 | 407 | 465 | 3.1e-21 | 75.2 | 8.8e-10 | 1.9e-06 | 27.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_8193.1_67819.t1 | gi|296214078|ref|XP_002807242.1| | 2.0e-25 |
Transcript
| Transcript ID | pfu_aug1.0_8193.1_67819.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8193.1_67819.t1 atgaaaatagtggacagaattgaagagaccaattcgtcatgtgacatcgagttggatcttggcgtggtgatacagccagc ccctcccacggtcatcgcccagaagtcctttcccttcctactgaactgctccgcctactcgggacccgagtataggccca tcaactacacgtggtacaaggatggagcgcccatctccctctcacggagaatcaaactggtcaacaatggctccttgtac tttcacagcatcaaacgaagaaagaagcgaaaaaatctgaatgatcaaggattctatgaatgcttcttgaccaactcaca agggacggtcattgccagacaagtggaactaaaaatagcgaggaactcggcaagcctcgttccccgaccagaaaccagac ccctcgggtttattgagttggcgtcgggtatccttcagattgacaatgtccgtatgtccgacatcggcagctattactgc tcagctcaccagagctttaccagtctcgtcaccaagggctccgtggctatcagctctcctatatggcgacacagcaaaga agccaaactgacggtcctacacggtcataaaaagtcgaggaatttgacctttgacatggaaagccatagaatttggtttt ggtcatggatagtcattgaccttgaccttcattatagaaagttttggaatttgacctttatgttaaatgtcttgaaattt tattttagtgatgcagaggaagatggtaaaccagatagtccagttttagaggatgttcacaaaaggcgtatcggtaacgg aaatctgaagttcatagaagtgtcggggattgatgaagggatttacaagtgtactgcgtcagcaccgggatatagtgatg ccgtggccctagttaacctcaatgtactgaagaatgctcctattgcacctcagtttgtaaaagccgagcctttgtctcct acggtaatgaacgtctcctggtcagcgtctgagtacagtgattgctgcccggtcataggatatacactacattataataa ctcacagagtaacacagatgacaaggtgctgtcattgacaactgtggtacagatcaccaatctacaaccatacacattgt acaagttctacgtacaggcgtacagtaccactggtggagccagtctgggatctcctgtagtactagctagaactctggaa ggagtgcctagtgccgcccctcgtgtgaatttgtccagcctcacctctacgaccattgatgtaaaatggtggccactgaa agagcatcagaggaacggaagaattaccaagtataagatcgtttacaaagaaggtgataaagacgaaaagacagaggaag ttcctgctaatacaatccattatgtcatcacaggttttaatattttacacccctaa |
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Protein
| Protein ID | pfu_aug1.0_8193.1_67819.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_8193.1_67819.t1 MKIVDRIEETNSSCDIELDLGVVIQPAPPTVIAQKSFPFLLNCSAYSGPEYRPINYTWYKDGAPISLSRRIKLVNNGSLY FHSIKRRKKRKNLNDQGFYECFLTNSQGTVIARQVELKIARNSASLVPRPETRPLGFIELASGILQIDNVRMSDIGSYYC SAHQSFTSLVTKGSVAISSPIWRHSKEAKLTVLHGHKKSRNLTFDMESHRIWFWSWIVIDLDLHYRKFWNLTFMLNVLKF YFSDAEEDGKPDSPVLEDVHKRRIGNGNLKFIEVSGIDEGIYKCTASAPGYSDAVALVNLNVLKNAPIAPQFVKAEPLSP TVMNVSWSASEYSDCCPVIGYTLHYNNSQSNTDDKVLSLTTVVQITNLQPYTLYKFYVQAYSTTGGASLGSPVVLARTLE GVPSAAPRVNLSSLTSTTIDVKWWPLKEHQRNGRITKYKIVYKEGDKDEKTEEVPANTIHYVITGFNILHP |
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