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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_6568.1_31241
Locus scaffold6568.1 : 18596 ... 21948 : +
To GenomeBrowser scaffold6568.1:18596..21948
Genes list of scaffold scaffold6568.1
Synonym NA

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_6568.1_31241.t1 1 1 CPSF_A 1 56 1.6e-17 63.5 3.9e-21 1.9e-17 63.3

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_6568.1_31241.t1 gi|301604148|ref|XP_002931705.1| PREDICTED: splicing factor 3B subunit 3 [Xenopus (Silurana) tropicalis] 4.99983e-42

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 1
>Adult tissues
Dshape 1
adductorMuscle 1
maleGonad 1

Transcript
Transcript IDpfu_aug1.0_6568.1_31241.t1
Definition-
>pfu_aug1.0_6568.1_31241.t1
atgctggtacctgttaactcgcatgaggaccttgactttttccagcacttggagatgtatatgaggtcggagcacccacc
cctgtgcggtagagatcatctgtccttcagatcttattattttcctgtcaagaatgtagttgacggtgatttgtgtgaaa
tgtttaattctatggatccagccaagcagaagagtgtggcagaggagcttgaccatacacccagtgaggtttcaaagaag
ctggaagacattagaaccagatatgcgttttag

Protein
Protein IDpfu_aug1.0_6568.1_31241.t1
Definition-
>pfu_aug1.0_6568.1_31241.t1
MLVPVNSHEDLDFFQHLEMYMRSEHPPLCGRDHLSFRSYYFPVKNVVDGDLCEMFNSMDPAKQKSVAEELDHTPSEVSKK
LEDIRTRYAF

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