Gene
Gene Model ID | pfu_aug1.0_6568.1_31241 |
---|---|
Locus | scaffold6568.1 : 18596 ... 21948 : + |
To GenomeBrowser | scaffold6568.1:18596..21948 |
Genes list of scaffold | scaffold6568.1 |
Synonym | NA |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_6568.1_31241.t1 | 1 | 1 | CPSF_A | 1 | 56 | 1.6e-17 | 63.5 | 3.9e-21 | 1.9e-17 | 63.3 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_6568.1_31241.t1 | gi|301604148|ref|XP_002931705.1| | PREDICTED: splicing factor 3B subunit 3 [Xenopus (Silurana) tropicalis] | 4.99983e-42 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
>Adult tissues | |
Dshape | 1 |
adductorMuscle | 1 |
maleGonad | 1 |
Transcript
Transcript ID | pfu_aug1.0_6568.1_31241.t1 |
---|---|
Definition | - |
>pfu_aug1.0_6568.1_31241.t1 atgctggtacctgttaactcgcatgaggaccttgactttttccagcacttggagatgtatatgaggtcggagcacccacc cctgtgcggtagagatcatctgtccttcagatcttattattttcctgtcaagaatgtagttgacggtgatttgtgtgaaa tgtttaattctatggatccagccaagcagaagagtgtggcagaggagcttgaccatacacccagtgaggtttcaaagaag ctggaagacattagaaccagatatgcgttttag |
Protein
Protein ID | pfu_aug1.0_6568.1_31241.t1 |
---|---|
Definition | - |
>pfu_aug1.0_6568.1_31241.t1 MLVPVNSHEDLDFFQHLEMYMRSEHPPLCGRDHLSFRSYYFPVKNVVDGDLCEMFNSMDPAKQKSVAEELDHTPSEVSKK LEDIRTRYAF |