Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_65041.1_49006
Locus scaffold65041.1 : 1 ... 3612 : +
To GenomeBrowser scaffold65041.1:1..3612
Genes list of scaffold scaffold65041.1
Synonym pfu_aug2.0_370.1_00665

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_65041.1_49006.t1 1 1 DUF2668 28 117 1.1e-11 45.1 7.7e-15 1.6e-11 44.5

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 1
egg-4cell 1
8-16cell 1
egg-Dshape 1
>Adult tissues

Transcript
Transcript IDpfu_aug1.0_65041.1_49006.t1
Definition-
>pfu_aug1.0_65041.1_49006.t1
agtgtgtgttgggtcagggatatatcaccacccaacatccctgtatctacgaaagttacagctacatatacaatgcgtac
tctctgaagtataaatattgttcatcataccaatattgctgtggtacctacacgtacagatactgctgttacgactacac
aaactattacagttcctacgtctatagttacatctctcatactatctcagcagcagccatcgctgggatagtgattggcg
tactgtttgctgctgccatcattataagcattatagtatgtatatgctgtgcggtacgcaagagaccagctcgtggagga
gttgtgtaccaaaacaatacaccagccgtagcggtagtccatagtcaggtactgcaggtatatgctgatcatcgcgggga
gatcaattctatacgaattctgacaaaaactaaagaagatgccttcataatacggatgtgttccaactctataccttctt
ga

Protein
Protein IDpfu_aug1.0_65041.1_49006.t1
Definition-
>pfu_aug1.0_65041.1_49006.t1
CVLGQGYITTQHPCIYESYSYIYNAYSLKYKYCSSYQYCCGTYTYRYCCYDYTNYYSSYVYSYISHTISAAAIAGIVIGV
LFAAAIIISIIVCICCAVRKRPARGGVVYQNNTPAVAVVHSQVLQVYADHRGEINSIRILTKTKEDAFIIRMCSNSIPS

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