Gene
| Gene Model ID | pfu_aug1.0_6438.1_45434 |
|---|---|
| Locus | scaffold6438.1 : 21745 ... 36476 : - |
| To GenomeBrowser | scaffold6438.1:21745..36476 |
| Genes list of scaffold | scaffold6438.1 |
| Synonym | pfu_aug2.0_1340.1_01552 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_6438.1_45434.t1 | 1 | 1 | FAM47 | 24 | 146 | 4.7e-12 | 45.7 | 3.4e-15 | 1.3e-11 | 44.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_6438.1_45434.t1 | gi|260830872|ref|XP_002610384.1| | hypothetical protein BRAFLDRAFT_120046 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 6 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 2 |
| maleGonad | 3 |
Transcript
| Transcript ID | pfu_aug1.0_6438.1_45434.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6438.1_45434.t1 gtataaagaaagattagatacaaaattcatcaagtccttgaagccctcagacacatcaaaaactcttgttgggaaaaact ggatttttgtaaaagatggtttagacgattttagagatggtttgcctcctctcacacagggtgacattctaataaagggt acaaaaggtcctggacctaatctcacaggaagtggagagaatgtttccgcagtcaaacagcctgcggtgcgtcgtcgctt cacgaagcaccagatatgttactcacgatcaactccactacaacaaagccgtcgagatcatattgacgagatagaataca gtctgatacagcatccgctagctctgtaccctcaccttgaagaggcagtcagtgcggagctgtttgaggacattgtggat atccttgaccccgagatgaaccttgaccccgatgaggagttagatgatcatttagaggaggaggatgaggaagaggagga gggaaaggaggaggaaagaccagaaacagccaagtctgacgctgaaaaaagtcaagactcaaatgaggaaggaaaaataa gaaatccatacagatggcttcctagaaaggaggaacgagaaaagaaagacaaaagaaaaacgacagaaaaatcagcatcc tctgaatctcagaaatactcaggtcagtatgagcccagttgggtcaagttccaatatggtgcctggtatctagatccgaa atcgtggaccaaacgaaaggatgatgagccgctggaaaatccaaaagaaactaaagataaagaaatgtcagaggctaaga aaaagagcaaatctctgaatcatgtaatagctcagtcacagggggctaaattattcatggactgggttaatgaaccaaag agacagaatgatcccaagaaggaccacacaaaaccagagattgagtggctcaacatttttaaattaaagaatctgctggt caaccgcaaaatactgtactatgtaccctctgaagaaaatttcattctcttcaataaattttctaaattgaaaatataa |
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Protein
| Protein ID | pfu_aug1.0_6438.1_45434.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6438.1_45434.t1 YKERLDTKFIKSLKPSDTSKTLVGKNWIFVKDGLDDFRDGLPPLTQGDILIKGTKGPGPNLTGSGENVSAVKQPAVRRRF TKHQICYSRSTPLQQSRRDHIDEIEYSLIQHPLALYPHLEEAVSAELFEDIVDILDPEMNLDPDEELDDHLEEEDEEEEE GKEEERPETAKSDAEKSQDSNEEGKIRNPYRWLPRKEEREKKDKRKTTEKSASSESQKYSGQYEPSWVKFQYGAWYLDPK SWTKRKDDEPLENPKETKDKEMSEAKKKSKSLNHVIAQSQGAKLFMDWVNEPKRQNDPKKDHTKPEIEWLNIFKLKNLLV NRKILYYVPSEENFILFNKFSKLKI |
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