Gene
| Gene Model ID | pfu_aug1.0_6297.1_67406 |
|---|---|
| Locus | scaffold6297.1 : 1 ... 11813 : + |
| To GenomeBrowser | scaffold6297.1:1..11813 |
| Genes list of scaffold | scaffold6297.1 |
| Synonym | pfu_aug2.0_100.1_00245 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_6297.1_67406.t1 | 1 | 1 | VWA | 38 | 198 | 1.6e-37 | 128.9 | 6.59998e-41 | 1.6e-37 | 128.9 |
| pfu_aug1.0_6297.1_67406.t1 | 2 | 1 | VWA_2 | 38 | 202 | 3.8e-17 | 62.9 | 1.5e-20 | 3.8e-17 | 62.9 |
| pfu_aug1.0_6297.1_67406.t1 | 2 | 2 | VWA_2 | 207 | 276 | 3.8e-17 | 62.9 | 0.46 | 1100.0 | -0.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_6297.1_67406.t1 | gi|148697327|gb|EDL29274.1| | procollagen, type XIV, alpha 1, isoform CRA_c, partial [Mus musculus] | 2.0e-22 |
Transcript
| Transcript ID | pfu_aug1.0_6297.1_67406.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6297.1_67406.t1 cggtaattgcgtatgatgtggcaccattagcttttacttttcctacaaatctgccaaatgaagccatcaacaatcataca gctacattttgtattaattttgtctctttctcagatgtggtcttcgtccttgatcgatcaggaagtgtcacccaagatga ttacgaagaggcggtagactttgtttacaacgtcacaaaatggctgacgatcggaccttcaaatattcaagtgtcggctg tgtcttttgcttcaaacgttgtcgaagaatttgatttagatgattacacaactaatacgacacttttagacgcaatagaa aatctgaaaagtacatcaaccggaggcgggacttacacacatagtgcattagagtatgtccgagacaacagtctcacttc cggtcatggtgcgcgcgcaaatgtaccaaaggccgttgttgttatgacggacggactttctgcaaacactataagtacgt ctgctagagcaacagatctccataatgatggagtggaagtatatgctattggtataggaaatgctgcttcgtctacaaat acagagttatcggacattgccagtgacccagattcctattatctccaccaggtgaatctgttccagtacttatgctccat cgttcctgaaatagtccctaaattggataacgacacgctagccttgagtatattccgatgtcccaccccggcaacaacga ccacgcccgttatgacattccttaataaaagtagaagtgctgacagtagcggggatacatcctcatcttcaagttcagac tccaccactattgcggctgcggcgtcggtggctgcagtagggacggttggtgccgctgtaggtgcggcagttggtgtagc caaatatctcagtatgctaaaagcccaagcgccaaatccgttcgttcagtcaattgtggctcagtacaagaatgcgccac ttggacagggcaaagcaaagttcagtcacaagttcaaggcctctggaggtatcccggccatgccagccattacatctaag cctcccgtcatcactgcttggcgatga |
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Protein
| Protein ID | pfu_aug1.0_6297.1_67406.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6297.1_67406.t1 VIAYDVAPLAFTFPTNLPNEAINNHTATFCINFVSFSDVVFVLDRSGSVTQDDYEEAVDFVYNVTKWLTIGPSNIQVSAV SFASNVVEEFDLDDYTTNTTLLDAIENLKSTSTGGGTYTHSALEYVRDNSLTSGHGARANVPKAVVVMTDGLSANTISTS ARATDLHNDGVEVYAIGIGNAASSTNTELSDIASDPDSYYLHQVNLFQYLCSIVPEIVPKLDNDTLALSIFRCPTPATTT TPVMTFLNKSRSADSSGDTSSSSSSDSTTIAAAASVAAVGTVGAAVGAAVGVAKYLSMLKAQAPNPFVQSIVAQYKNAPL GQGKAKFSHKFKASGGIPAMPAITSKPPVITAWR |
|