Gene
| Gene Model ID | pfu_aug1.0_6248.1_02193 |
|---|---|
| Locus | scaffold6248.1 : 30830 ... 88545 : - |
| To GenomeBrowser | scaffold6248.1:30830..88545 |
| Genes list of scaffold | scaffold6248.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_6248.1_02193.t1 | 3 | 1 | RCC1 | 180 | 213 | 9.2e-13 | 48.1 | 0.00019 | 0.71 | 10.1 |
| pfu_aug1.0_6248.1_02193.t1 | 3 | 2 | RCC1 | 217 | 285 | 9.2e-13 | 48.1 | 1.3e-08 | 4.6e-05 | 23.5 |
| pfu_aug1.0_6248.1_02193.t1 | 3 | 3 | RCC1 | 289 | 330 | 9.2e-13 | 48.1 | 0.00026 | 0.98 | 9.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_6248.1_02193.t1 | gi|260786461|ref|XP_002588276.1| | hypothetical protein BRAFLDRAFT_124709 [Branchiostoma floridae] | 4.0e-24 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_6248.1_02193.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6248.1_02193.t1 atggtatgctttgatattggtcctttattactgaaagtgccttttaaagttccagaaaatgttactacatctgaactaag ccaaaacatggcaagaaaaggagctcaaattatgccgttacgaactaatctgaaaaatctggagatcagacttctagcaa agagaatcgatgtaaacgatctaattcagcagacgttaggagatctaattcagcagacattaggaggtagaaaggtagaa tgtattgctctcctcatgagctgctctggaccatccatacttatcacaggaaaagatgaaaagatactaactaaagaaag catgcatgacaatcaacctatccgagagtttctgaccagcctggttagtacgtgtttggacagcggagagaataaccgac ttgacttcatggtgtgtaacgctgtaatgcatgctgacgggcaagccattgctaaagaactggaggctttagttaagata ccagtaacaatgtcacgagatttgatgggagccgagggtaaagatagaatagtggagggcaacgtaaaacctaacctctg tcaacccgagagagttaagattcccgagcctgtggtgatacgtgaagtgaagtgtggtgtagatggcaccatgttacttt ctgacgttggcagtgtgttcgcctgtggtagcaatacggacaataagctggggctcaacctcagacaaggtttcattatg gccatgaaaaatatattcaagaaacaacattttacacttttcataagaaacagctgtcagccccagagagttaagattcc cgagcctgtggtgatacgggaagtgaagtgcggtgtagatggcaccatgttactctctgacgttggcagtgtgtttgcct gcggtagtaatacggacaataagctggggctcaacctcagacaaggtttcatcatggccatgaaaaatatattcaaaaag agagtacattgtggagaccatttcacggtgtgtagcaccacagcaaatgagctgtactactggggtctccgatttaaatc tccgtcactgcagagtaaccctgatgacgaagacagcaaatcaagcacgaatggtagtgtgatcaaccgtgacgacttga gaattctgaagtctggagatgaaattctgacaatcagtggatttttctgccacggagaaaacttgttcatacagatggac acaactgcacctccacctagacggaaaaaacggaagaagctcggaatcagaaaacggttcagcggtaacacattgaatgt tcccccagagactaaggctttatactcggcctctagcagggagggaggggatgaatattcttcagaagcttcggaaatag atactcaaggaactgtaaagagtacaatcaaagaacagaaccgagcctctttatcaaccaatagtgctgaaagtgagatt gaccttcatacagctggattccagtctgacgggagtactaaagaacacagggaagacttggcactgaaggaacaattagc agcacgtgggtttgtgtctgatgtcacagttaaacggaaacaggaggcattgttgaatgaattggaaatgacgagagagg aaaagaaaagagccgaggataaaatccgagagttagaggaggagcatagatatcaacaagaagtcgttcgacgtgaacta gagaaaaaagctcaggaaagagaacaaggtttagagcaggagatccaggtgttgaaacagcagttacaatcccaggattc ccagctcagggacaacaatagacttttacagaatctgcaggaggaactcaacaaagtgaaggggcggaacaagggtagtc ccggcagtttgatcggcaaagacagcagagtctgcagtgttatgtga |
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Protein
| Protein ID | pfu_aug1.0_6248.1_02193.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6248.1_02193.t1 MVCFDIGPLLLKVPFKVPENVTTSELSQNMARKGAQIMPLRTNLKNLEIRLLAKRIDVNDLIQQTLGDLIQQTLGGRKVE CIALLMSCSGPSILITGKDEKILTKESMHDNQPIREFLTSLVSTCLDSGENNRLDFMVCNAVMHADGQAIAKELEALVKI PVTMSRDLMGAEGKDRIVEGNVKPNLCQPERVKIPEPVVIREVKCGVDGTMLLSDVGSVFACGSNTDNKLGLNLRQGFIM AMKNIFKKQHFTLFIRNSCQPQRVKIPEPVVIREVKCGVDGTMLLSDVGSVFACGSNTDNKLGLNLRQGFIMAMKNIFKK RVHCGDHFTVCSTTANELYYWGLRFKSPSLQSNPDDEDSKSSTNGSVINRDDLRILKSGDEILTISGFFCHGENLFIQMD TTAPPPRRKKRKKLGIRKRFSGNTLNVPPETKALYSASSREGGDEYSSEASEIDTQGTVKSTIKEQNRASLSTNSAESEI DLHTAGFQSDGSTKEHREDLALKEQLAARGFVSDVTVKRKQEALLNELEMTREEKKRAEDKIRELEEEHRYQQEVVRREL EKKAQEREQGLEQEIQVLKQQLQSQDSQLRDNNRLLQNLQEELNKVKGRNKGSPGSLIGKDSRVCSVM |
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