Gene
| Gene Model ID | pfu_aug1.0_5377.1_23779 |
|---|---|
| Locus | scaffold5377.1 : 44214 ... 45995 : - |
| To GenomeBrowser | scaffold5377.1:44214..45995 |
| Genes list of scaffold | scaffold5377.1 |
| Synonym | pfu_aug2.0_1490.1_01667 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5377.1_23779.t1 | 1 | 1 | BTB | 64 | 165 | 7.3e-22 | 77.4 | 3.3e-25 | 1.6e-21 | 76.3 |
| pfu_aug1.0_5377.1_23779.t1 | 1 | 1 | BACK | 185 | 272 | 1.6e-16 | 60.0 | 3.2e-20 | 1.6e-16 | 60.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5377.1_23779.t1 | gi|260834889|ref|XP_002612442.1| | hypothetical protein BRAFLDRAFT_58277 [Branchiostoma floridae] | 7.0e-23 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_5377.1_23779.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5377.1_23779.t1 atgttggacgaggacaacagcttacgaccggtaacgaggagccaggaacttcaaacactcgctctaacgtccgacgacgg aacattaccgtctctacctcaaaatatagaggtgcaattacaaagatttcgtcatgttccggtggacagagtaatgcact atgcaaatacagggtcttatgtagatcatatctataataatgaacacttgtatgacgccatcgtgcgcatcggcgacaag gttttcactgctcatagagttgttctgtcatgctatagcagttattttgccgaactcttcgcgaagatgaacgaaaatat ccgagtaccgctcgagattagactgaagggtgttcatcccgaagcattttccatatttcttacgttcgcttacaccggtg aaataaatatactgccagaactcgtgcccgacatcatgaaaatgtcagaaaatttgcgaatttattctctgcgcatgaaa tgcttggattacatggacctacttccatgtaacgacattctgttgttgcttgccaacttccgagagacacaagaaagcga gatttttgttcgttcaatgaagtacgtcaacgaaaaattcgcagaagtcatttcctgcgatatatttttgctcttggaca tcgagacagtttgctttttgttgtcgtatgaccaccttgttgcgtgtacagagatggacatttttaaggcaggtttaaga tggatcgagtttaagttacaggagcgtagccgctacttagagagagtcctggagtgtatccgcctcacactgatgaccat ggatgaacttttcctggtagtaagagctatacaagcgctaatcgcagatgaccgtggcagagatatcatactacgagcga actggatactaaccgcctacattttgggtcgagaagatccgtataagtttcccgagcacaaagtacgaacggaactgaaa acaactccatcctccacaagtgaaccattctattcgcaacatgctttccttccggtcgacgtggagatcggcttaaccag acctagtgcaccatccaccccgcaaaaccagaacggacatgcgcattatcccctaatcaaaccggaagcttcaatttcaa atgctcgtactacgcgcaccgacaaaccgacatcgaagtcgtctgcacatgcattgaatgcgaagaaagattcggtcata aggagggagacaaagtctcaagtgcagagcgacgttacgcctgtccatcgttccgttgacgcaaaaacgggagacatatt tgccgttggtgatttttgcaaatattccacagacaaacaaaacagagaaggtatttcttcttcataa |
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Protein
| Protein ID | pfu_aug1.0_5377.1_23779.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5377.1_23779.t1 MLDEDNSLRPVTRSQELQTLALTSDDGTLPSLPQNIEVQLQRFRHVPVDRVMHYANTGSYVDHIYNNEHLYDAIVRIGDK VFTAHRVVLSCYSSYFAELFAKMNENIRVPLEIRLKGVHPEAFSIFLTFAYTGEINILPELVPDIMKMSENLRIYSLRMK CLDYMDLLPCNDILLLLANFRETQESEIFVRSMKYVNEKFAEVISCDIFLLLDIETVCFLLSYDHLVACTEMDIFKAGLR WIEFKLQERSRYLERVLECIRLTLMTMDELFLVVRAIQALIADDRGRDIILRANWILTAYILGREDPYKFPEHKVRTELK TTPSSTSEPFYSQHAFLPVDVEIGLTRPSAPSTPQNQNGHAHYPLIKPEASISNARTTRTDKPTSKSSAHALNAKKDSVI RRETKSQVQSDVTPVHRSVDAKTGDIFAVGDFCKYSTDKQNREGISSS |
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