Gene
| Gene Model ID | pfu_aug1.0_5277.1_38111 |
|---|---|
| Locus | scaffold5277.1 : 71906 ... 93059 : + |
| To GenomeBrowser | scaffold5277.1:71906..93059 |
| Genes list of scaffold | scaffold5277.1 |
| Synonym | pfu_aug2.0_5170.1_02714 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5277.1_38111.t1 | 4 | 1 | Topoisom_I_N | 33 | 61 | 1.2e-29 | 103.1 | 0.95 | 4700.0 | -3.4 |
| pfu_aug1.0_5277.1_38111.t1 | 4 | 2 | Topoisom_I_N | 110 | 205 | 1.2e-29 | 103.1 | 5.6e-32 | 2.8e-28 | 98.7 |
| pfu_aug1.0_5277.1_38111.t1 | 4 | 3 | Topoisom_I_N | 222 | 267 | 1.2e-29 | 103.1 | 2.7e-07 | 0.0013 | 18.0 |
| pfu_aug1.0_5277.1_38111.t1 | 1 | 1 | Topoisom_I | 314 | 449 | 0.0 | 164.4 | 0.0 | 0.0 | 164.1 |
| pfu_aug1.0_5277.1_38111.t1 | 4 | 4 | Topoisom_I_N | 413 | 435 | 1.2e-29 | 103.1 | 0.71 | 3500.0 | -3.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5277.1_38111.t1 | gi|350404638|ref|XP_003487171.1| | PREDICTED: DNA topoisomerase I, mitochondrial [Bombus impatiens] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_5277.1_38111.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5277.1_38111.t1 atgaagacaacgaagattacgaggaaacgccaaaggtgggaagaggagagacatgatgatggagttgaagggacattttt agaacacgaaaagctaaaacctgacagtgctaagaaacgtaaacagctttctgatgatgaagatgatgaggattatgaaa aaaaaccgaagaaaaagaagaaggtgaaaagtggatcaggagagtcggcaagcccaattaaaacaccaaataaatcacca actgatttagacaagggagacaaggctgaggaatccaataaagtttggagatggtgggaagaagaagaagaaagtcaaga tgatggagttaagtggacgtttttagaacacaaaggtcccgtctttgcccctgactatgagccgatacctaaaaatgtca agttttactatgacggagaagaggtgaagcttagtcaggacacggaggaagtagccacattttatgccaggatgttagaa catgactacacgaccaaggaggtgtttaatcataacttcatgaaggactggagaaaggtaccaattttcgtcattttcgt cagtgcctcacttgacgaaattacgtatcgacgaatatcaatgctcttgacaaaatatagtgtaaaaagggaaaaattga atcagtatcggttcagtatcttggttatgatccagcaggagaaaaagaagatcaaagatctcagtaagtgtaactttaag gaaatggctgagtatttcaaacaactgagtgaaggaagaaaaaaaccgaacaaaggaggaaaagaagaatttcatgaaac tttacgagaaagattttcaatagtacacaacataaaatctaatatggcgaagaacagtttgtcaataccccttaaaggaa gcaagtactcaaggaccaccaaattgtccacagttatcattcttttgtttgctactcagcatgaagactggcagaaatat gagacggcaagaccgttacataagacggtggataaaatccgtgcccagtacagagaggagtggaaatctaaagagatgag aatacggcagagagctgtggcactatactttattgacaagcttgcattgagaacaggtagtgagaaagaagaaggtgaaa cagtggacaccgtgggctgttgttctctccgcacggagcacttaactcttcacgaaaaacaccaggaccaggagaatgtg gtggagtttgatttccttggtaaagattccattagatattacaacagagtgacggtggaaaaatgcgtattcaagaacct tcaactctttatggagaacaaatcaggagaagatgaggtctttgacagactgaatgtgcaagaaatgggaagttccaata gagaagatttacaacaaaatgcagagagagaagttccgatgggctatcgacatggcgacggcagaatttga |
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Protein
| Protein ID | pfu_aug1.0_5277.1_38111.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5277.1_38111.t1 MKTTKITRKRQRWEEERHDDGVEGTFLEHEKLKPDSAKKRKQLSDDEDDEDYEKKPKKKKKVKSGSGESASPIKTPNKSP TDLDKGDKAEESNKVWRWWEEEEESQDDGVKWTFLEHKGPVFAPDYEPIPKNVKFYYDGEEVKLSQDTEEVATFYARMLE HDYTTKEVFNHNFMKDWRKVPIFVIFVSASLDEITYRRISMLLTKYSVKREKLNQYRFSILVMIQQEKKKIKDLSKCNFK EMAEYFKQLSEGRKKPNKGGKEEFHETLRERFSIVHNIKSNMAKNSLSIPLKGSKYSRTTKLSTVIILLFATQHEDWQKY ETARPLHKTVDKIRAQYREEWKSKEMRIRQRAVALYFIDKLALRTGSEKEEGETVDTVGCCSLRTEHLTLHEKHQDQENV VEFDFLGKDSIRYYNRVTVEKCVFKNLQLFMENKSGEDEVFDRLNVQEMGSSNREDLQQNAEREVPMGYRHGDGRI |
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