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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_5106.1_38063
Locus scaffold5106.1 : 15566 ... 18749 : +
To GenomeBrowser scaffold5106.1:15566..18749
Genes list of scaffold scaffold5106.1
Synonym NA

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_5106.1_38063.t1 1 1 EF-hand_7 73 132 7.2e-06 26.0 6.2e-09 1.3e-05 25.2
pfu_aug1.0_5106.1_38063.t1 2 1 EF-hand_1 73 100 7.9e-06 24.8 2.3e-06 0.0049 16.0
pfu_aug1.0_5106.1_38063.t1 2 2 EF-hand_1 122 134 7.9e-06 24.8 0.002 4.2 6.8

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_5106.1_38063.t1 gi|260813529|ref|XP_002601470.1| hypothetical protein BRAFLDRAFT_271463 [Branchiostoma floridae] 4.0e-25

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
egg-4cell 1
8-16cell 1
trochophore 1
>Adult tissues
Dshape 1
mantle 1
mantleEdge 1
mantlePallium 1
pearlSac 1

Transcript
Transcript IDpfu_aug1.0_5106.1_38063.t1
Definition-
>pfu_aug1.0_5106.1_38063.t1
atgaatancgtactgaaatacatggaggaccacaaatcacaattcccagaacaaacaatccagaccctaagagaaagatt
aggacagaccaggcaggaaaaagaaatgataaagggtggacccatgaaggtcaggaggaatgatggtgaccttgatatcc
tggtgagacaagtaagagctcagctgaagaagattgccatcacggataagacgcgtgtagacgagatgttcctccgttat
aacaaagataggacaggttttattgatgccaacaatatgaggaatttatgccgtagtctacaactgccggtagatgatga
tgttatcaatgctctgattgcacagtgtaccacagatccagagggcaagatctcattagaagatttcagaaaatttgtgg
aaagttcatga

Protein
Protein IDpfu_aug1.0_5106.1_38063.t1
Definition-
>pfu_aug1.0_5106.1_38063.t1
MNXVLKYMEDHKSQFPEQTIQTLRERLGQTRQEKEMIKGGPMKVRRNDGDLDILVRQVRAQLKKIAITDKTRVDEMFLRY
NKDRTGFIDANNMRNLCRSLQLPVDDDVINALIAQCTTDPEGKISLEDFRKFVESS

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