Gene
| Gene Model ID | pfu_aug1.0_50647.1_70702 |
|---|---|
| Locus | scaffold50647.1 : 1 ... 4309 : - |
| To GenomeBrowser | scaffold50647.1:1..4309 |
| Genes list of scaffold | scaffold50647.1 |
| Synonym | pfu_aug2.0_182.1_07108 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_50647.1_70702.t1 | 4 | 1 | EF-hand_1 | 19 | 44 | 5.2e-24 | 81.6 | 1.9e-07 | 0.00031 | 19.8 |
| pfu_aug1.0_50647.1_70702.t1 | 4 | 1 | EF-hand_6 | 19 | 45 | 2.2e-21 | 73.7 | 6.1e-08 | 0.0001 | 21.8 |
| pfu_aug1.0_50647.1_70702.t1 | 4 | 1 | EF-hand_8 | 19 | 45 | 2.2e-13 | 49.5 | 0.00029 | 0.48 | 10.0 |
| pfu_aug1.0_50647.1_70702.t1 | 2 | 1 | EF-hand_7 | 22 | 77 | 8.6e-22 | 77.0 | 7.5e-12 | 1.2e-08 | 34.9 |
| pfu_aug1.0_50647.1_70702.t1 | 4 | 1 | EF-hand_5 | 25 | 42 | 2.7e-13 | 48.6 | 6.6e-06 | 0.011 | 15.0 |
| pfu_aug1.0_50647.1_70702.t1 | 4 | 2 | EF-hand_8 | 47 | 76 | 2.2e-13 | 49.5 | 0.00047 | 0.78 | 9.4 |
| pfu_aug1.0_50647.1_70702.t1 | 4 | 2 | EF-hand_1 | 60 | 80 | 5.2e-24 | 81.6 | 1.4e-07 | 0.00023 | 20.2 |
| pfu_aug1.0_50647.1_70702.t1 | 4 | 2 | EF-hand_6 | 60 | 80 | 2.2e-21 | 73.7 | 4.9e-06 | 0.008 | 15.9 |
| pfu_aug1.0_50647.1_70702.t1 | 4 | 2 | EF-hand_5 | 61 | 75 | 2.7e-13 | 48.6 | 0.00019 | 0.32 | 10.4 |
| pfu_aug1.0_50647.1_70702.t1 | 4 | 3 | EF-hand_8 | 97 | 124 | 2.2e-13 | 49.5 | 9.9e-07 | 0.0016 | 17.9 |
| pfu_aug1.0_50647.1_70702.t1 | 4 | 3 | EF-hand_1 | 101 | 123 | 5.2e-24 | 81.6 | 9.0e-09 | 1.5e-05 | 23.9 |
| pfu_aug1.0_50647.1_70702.t1 | 4 | 3 | EF-hand_6 | 101 | 124 | 2.2e-21 | 73.7 | 6.4e-08 | 0.00011 | 21.8 |
| pfu_aug1.0_50647.1_70702.t1 | 4 | 3 | EF-hand_5 | 101 | 122 | 2.7e-13 | 48.6 | 8.1e-07 | 0.0013 | 17.9 |
| pfu_aug1.0_50647.1_70702.t1 | 2 | 2 | EF-hand_7 | 102 | 156 | 8.6e-22 | 77.0 | 4.9e-15 | 8.0e-12 | 45.1 |
| pfu_aug1.0_50647.1_70702.t1 | 4 | 4 | EF-hand_8 | 129 | 154 | 2.2e-13 | 49.5 | 7.2e-06 | 0.012 | 15.2 |
| pfu_aug1.0_50647.1_70702.t1 | 4 | 4 | EF-hand_1 | 133 | 158 | 5.2e-24 | 81.6 | 8.1e-08 | 0.00013 | 20.9 |
| pfu_aug1.0_50647.1_70702.t1 | 4 | 4 | EF-hand_6 | 133 | 158 | 2.2e-21 | 73.7 | 4.5e-06 | 0.0074 | 16.0 |
| pfu_aug1.0_50647.1_70702.t1 | 4 | 4 | EF-hand_5 | 134 | 153 | 2.7e-13 | 48.6 | 0.00018 | 0.29 | 10.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_50647.1_70702.t1 | gi|221110974|ref|XP_002167840.1| | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_50647.1_70702.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_50647.1_70702.t1 aaatattatggctcgggcaaccagtttctttgacccaaatgcaccggatgttgttctgagaagcttatatatgaaatacg acaaagatggcagcggttctctggacaagaacgaactgagcagtctcttcaaggacgatcttggactgacggacagccaa gtagaagcgtactgtctactacttgataaagacggtgatgcaaaaatatcgtttgacgaacttgtttcatggttgaagag tggagaaagattcgagaatcttaaagataagtcccgttataacagacttcaaaaagctgttgcaatgttcaagaaatatg ataaagacggtaataattccttggaccgaaatgaattcaagaatttatttctcgatgttggcgggaaacccgagaaattc gatgccgctttagcccaaatggatagagatggcaatggcgtcattgccttccaagaatttttgaaatggctgaattggat acctttggacgatatttga |
|
Protein
| Protein ID | pfu_aug1.0_50647.1_70702.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_50647.1_70702.t1 NIMARATSFFDPNAPDVVLRSLYMKYDKDGSGSLDKNELSSLFKDDLGLTDSQVEAYCLLLDKDGDAKISFDELVSWLKS GERFENLKDKSRYNRLQKAVAMFKKYDKDGNNSLDRNEFKNLFLDVGGKPEKFDAALAQMDRDGNGVIAFQEFLKWLNWI PLDDI |
|