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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_4660.1_44995
Locus scaffold4660.1 : 1 ... 3298 : +
To GenomeBrowser scaffold4660.1:1..3298
Genes list of scaffold scaffold4660.1
Synonym pfu_aug2.0_1325.1_18266

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_4660.1_44995.t1 1 1 RVT_1 138 254 1.5e-08 34.2 2.1e-12 3.1e-08 33.2

Transcript
Transcript IDpfu_aug1.0_4660.1_44995.t1
Definition-
>pfu_aug1.0_4660.1_44995.t1
acagtaaaaacacaacgcggaacaaagatcaccggactacacctgtaaggagaatcaaactagaaagaaacctgtgtaaa
gacaagaaattgttgaccagtgatgccgaattaccaacacatttactgaaattatatgacgatgcaggacctacaagttc
tgatcatgagaagagagaaattgctcagttgcttttacgcaaccaacatgtattttcagagcatgagtttgaccttggat
ttactcctcttggggaacatgccattgatacaggtgtacacaaacctgtaaaacagcccccaagacgtgtaccacatgct
atggctaatgaagaaaaagagagcattgagaaacttgatgaacaaggaattattaagaaatccacttcaccattggcttc
acctgtagttttagtgcgtaagaagtcaggtggtttacgagtgtgtatagattataggaaactcaatgctcttaccctta
aggatgcctttccactaccccgcattcaagattatcttgatgttgtttctggtgcttgcttgttttcaacttttgacctg
acaagcggctatcaccaagtacctgtaaaacaaagtgatcaagctaaaactgcatttgtaacaaagtatgggctatatga
atacacgtctatgcctttcagcttgacgaacgcgcctgtcacatttcaaagaatcatggaaatagcactaagtggtttac
agtgggtaacatgtcttatctacttagatgatgtgtgcagcttattccaagatgaggtttgttttctgggccacattgtc
aacaaaaatggtgtgaaaccaaatcctgataacacagtgaagatacaaaattggccaacgcccaagactgttaccgaggt
tcgccaatttcttggaatggcttcttataaccgtcgctttgtgaaaaattttgcacaaattgcagcccctcttattaacc
ttaccaggaagaatgtgagtttccattggacagatgagtgtcagaaatccataaagaaactgaaagagattttgacagga
ccagaaatcatggccttcccaaatgatactggtacatatatattgaatacagatgccagtaacaccagcattgggagtgt
tctatcacagatacaaaatggacaggagcgtgtgattgctgatgcaagtagagccatgaacaagtccgagaaaaactact
gtgtgacagataaagaactcttggctgtacgttattttattgaatacttcaggcaatacttactaggacgaaaatttgtt
gtacgtacagatcaccaggccatagtatggttatacaaattcaaggaaccaaaaggtcgaatcgcccgttggattgaaat
cctctcttctttcaactttgttatggaatataggccatgcaacaagcattcaaatgctgattcactttctagatgtaaga
atccaactgattgtcaatgcccagagatagataatgaaggaagtctgaaatgtggaccatgtcccaagtgtaagagacga
ctagtaggggttcctgaacctacctttgttagacgacctcggaagactgatagttcatttgcaactaaggcagtaaaaac
caggtctcatgtagaaaaagatgcaacattttggacaacaattagtggcaccgacgtaacaaaaatgcaaccgctacaga
atgaagacccggatattaaaccagtgtaccagtggaaactacaggaaactaaacccagtaaggctgaacttgccatgcaa
agccctgctactagacactactgcttaatgtgggaatccctagaattacaaaataatgtattcgtgaaaattcaccctaa
caaggaggggttgggagatgatacacagcttatcacacctaagaagcttcagcaagccattttgttctacaatcacgatt
caatgatgtcgggtcacttaggagacaacagaacttggaagaaacccgtgccaaattttactggtacgaaatga

Protein
Protein IDpfu_aug1.0_4660.1_44995.t1
Definition-
>pfu_aug1.0_4660.1_44995.t1
SKNTTRNKDHRTTPVRRIKLERNLCKDKKLLTSDAELPTHLLKLYDDAGPTSSDHEKREIAQLLLRNQHVFSEHEFDLGF
TPLGEHAIDTGVHKPVKQPPRRVPHAMANEEKESIEKLDEQGIIKKSTSPLASPVVLVRKKSGGLRVCIDYRKLNALTLK
DAFPLPRIQDYLDVVSGACLFSTFDLTSGYHQVPVKQSDQAKTAFVTKYGLYEYTSMPFSLTNAPVTFQRIMEIALSGLQ
WVTCLIYLDDVCSLFQDEVCFLGHIVNKNGVKPNPDNTVKIQNWPTPKTVTEVRQFLGMASYNRRFVKNFAQIAAPLINL
TRKNVSFHWTDECQKSIKKLKEILTGPEIMAFPNDTGTYILNTDASNTSIGSVLSQIQNGQERVIADASRAMNKSEKNYC
VTDKELLAVRYFIEYFRQYLLGRKFVVRTDHQAIVWLYKFKEPKGRIARWIEILSSFNFVMEYRPCNKHSNADSLSRCKN
PTDCQCPEIDNEGSLKCGPCPKCKRRLVGVPEPTFVRRPRKTDSSFATKAVKTRSHVEKDATFWTTISGTDVTKMQPLQN
EDPDIKPVYQWKLQETKPSKAELAMQSPATRHYCLMWESLELQNNVFVKIHPNKEGLGDDTQLITPKKLQQAILFYNHDS
MMSGHLGDNRTWKKPVPNFTGTK

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