Gene
| Gene Model ID | pfu_aug1.0_4606.1_52319 |
|---|---|
| Locus | scaffold4606.1 : 35877 ... 61815 : - |
| To GenomeBrowser | scaffold4606.1:35877..61815 |
| Genes list of scaffold | scaffold4606.1 |
| Synonym | pfu_aug2.0_474.1_14193 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4606.1_52319.t1 | 5 | 1 | Thioredoxin_7 | 20 | 50 | 7.8e-19 | 67.4 | 0.038 | 51.0 | 3.9 |
| pfu_aug1.0_4606.1_52319.t1 | 5 | 1 | Thioredoxin_6 | 27 | 81 | 1.1e-07 | 31.8 | 2.0e-05 | 0.027 | 14.2 |
| pfu_aug1.0_4606.1_52319.t1 | 4 | 1 | Redoxin | 42 | 90 | 9.7e-10 | 38.1 | 0.4 | 540.0 | 0.0 |
| pfu_aug1.0_4606.1_52319.t1 | 5 | 1 | Thioredoxin | 118 | 143 | 0.0 | 184.0 | 0.002 | 2.7 | 7.7 |
| pfu_aug1.0_4606.1_52319.t1 | 5 | 2 | Thioredoxin_7 | 129 | 155 | 7.8e-19 | 67.4 | 0.23 | 310.0 | 1.4 |
| pfu_aug1.0_4606.1_52319.t1 | 5 | 2 | Thioredoxin | 154 | 203 | 0.0 | 184.0 | 1.6e-09 | 2.2e-06 | 27.3 |
| pfu_aug1.0_4606.1_52319.t1 | 4 | 1 | Thioredoxin_8 | 157 | 177 | 1.7e-15 | 56.8 | 0.87 | 1200.0 | -0.3 |
| pfu_aug1.0_4606.1_52319.t1 | 4 | 1 | Thioredoxin_2 | 160 | 185 | 6.7e-17 | 61.7 | 0.0059 | 8.0 | 6.7 |
| pfu_aug1.0_4606.1_52319.t1 | 5 | 2 | Thioredoxin_6 | 160 | 205 | 1.1e-07 | 31.8 | 0.067 | 90.0 | 2.7 |
| pfu_aug1.0_4606.1_52319.t1 | 5 | 3 | Thioredoxin | 225 | 275 | 0.0 | 184.0 | 5.5e-18 | 7.4e-15 | 54.5 |
| pfu_aug1.0_4606.1_52319.t1 | 5 | 3 | Thioredoxin_6 | 225 | 271 | 1.1e-07 | 31.8 | 0.0035 | 4.7 | 6.9 |
| pfu_aug1.0_4606.1_52319.t1 | 5 | 3 | Thioredoxin_7 | 230 | 264 | 7.8e-19 | 67.4 | 1.1e-06 | 0.0015 | 18.5 |
| pfu_aug1.0_4606.1_52319.t1 | 3 | 1 | AhpC-TSA | 234 | 275 | 5.9e-13 | 48.5 | 7.6e-07 | 0.001 | 18.7 |
| pfu_aug1.0_4606.1_52319.t1 | 4 | 2 | Redoxin | 235 | 285 | 9.7e-10 | 38.1 | 3.3e-06 | 0.0045 | 16.5 |
| pfu_aug1.0_4606.1_52319.t1 | 4 | 2 | Thioredoxin_2 | 238 | 271 | 6.7e-17 | 61.7 | 1.8e-07 | 0.00024 | 21.2 |
| pfu_aug1.0_4606.1_52319.t1 | 4 | 2 | Thioredoxin_8 | 241 | 284 | 1.7e-15 | 56.8 | 6.1e-08 | 8.3e-05 | 22.6 |
| pfu_aug1.0_4606.1_52319.t1 | 5 | 4 | Thioredoxin_6 | 302 | 336 | 1.1e-07 | 31.8 | 0.024 | 32.0 | 4.2 |
| pfu_aug1.0_4606.1_52319.t1 | 5 | 4 | Thioredoxin | 314 | 357 | 0.0 | 184.0 | 1.1e-15 | 1.5e-12 | 47.0 |
| pfu_aug1.0_4606.1_52319.t1 | 5 | 4 | Thioredoxin_7 | 324 | 347 | 7.8e-19 | 67.4 | 3.6e-06 | 0.0048 | 16.8 |
| pfu_aug1.0_4606.1_52319.t1 | 4 | 3 | Redoxin | 328 | 361 | 9.7e-10 | 38.1 | 0.0017 | 2.3 | 7.7 |
| pfu_aug1.0_4606.1_52319.t1 | 4 | 3 | Thioredoxin_2 | 329 | 354 | 6.7e-17 | 61.7 | 3.1e-05 | 0.042 | 14.0 |
| pfu_aug1.0_4606.1_52319.t1 | 4 | 3 | Thioredoxin_8 | 330 | 358 | 1.7e-15 | 56.8 | 3.1e-05 | 0.042 | 13.9 |
| pfu_aug1.0_4606.1_52319.t1 | 3 | 2 | AhpC-TSA | 330 | 361 | 5.9e-13 | 48.5 | 0.00079 | 1.1 | 8.9 |
| pfu_aug1.0_4606.1_52319.t1 | 5 | 5 | Thioredoxin | 372 | 435 | 0.0 | 184.0 | 1.6e-17 | 2.2e-14 | 52.9 |
| pfu_aug1.0_4606.1_52319.t1 | 5 | 5 | Thioredoxin_6 | 372 | 434 | 1.1e-07 | 31.8 | 0.02 | 27.0 | 4.5 |
| pfu_aug1.0_4606.1_52319.t1 | 4 | 4 | Redoxin | 373 | 426 | 9.7e-10 | 38.1 | 7.3e-06 | 0.0099 | 15.4 |
| pfu_aug1.0_4606.1_52319.t1 | 3 | 3 | AhpC-TSA | 380 | 430 | 5.9e-13 | 48.5 | 1.2e-06 | 0.0016 | 18.1 |
| pfu_aug1.0_4606.1_52319.t1 | 5 | 5 | Thioredoxin_7 | 381 | 437 | 7.8e-19 | 67.4 | 6.2e-08 | 8.4e-05 | 22.5 |
| pfu_aug1.0_4606.1_52319.t1 | 4 | 4 | Thioredoxin_2 | 386 | 434 | 6.7e-17 | 61.7 | 9.4e-07 | 0.0013 | 18.9 |
| pfu_aug1.0_4606.1_52319.t1 | 4 | 4 | Thioredoxin_8 | 390 | 436 | 1.7e-15 | 56.8 | 1.9e-06 | 0.0026 | 17.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4606.1_52319.t1 | gi|260825325|ref|XP_002607617.1| | hypothetical protein BRAFLDRAFT_207882 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_4606.1_52319.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4606.1_52319.t1 atggagccaaacaaggtcctcctgcctctccatcatggagccaaacaaggtagaaatctgatagaagatgtggaggatcc aaaggtgtttaagaagctgataaggactaagaccaatctgctggcaatatttgctaagaatgataaagcggcctctaagt acaactctatatttgcggatgtcgctttagagatgaaagggaaggcaactctagcttatattgattgcagggatggaaac ttcaataaagattatgacagaagaatggttaccaagtcgatgattaacttcctacttgacccgacgggagacgttccgtg ggaagaagagcccacagcgactgatgtggtacatattgacagcccggagagctttaacaaactactgaggaaagataaac atccaatacttgtcatgttttatgctccattgacctacctcagcgtcaagatcactggtacacttgctgcggttgatgcc accaaagaaaagaaaaccggtgattcattcaaaatccagggattccctactgttaaatacttcaaagatggtgaatttgc atttgacttcaatgaaagaacagaagataagattttagagtttatgaaagatccaaaggagcctcccccgccccccgcac cagaacctaactggtcagagatggagagtgaagttgtacatcttactgacgaaaactttaaatcataccttaagaagaag aaacatgcccttgtaatgttttatgcaccatggtgtggacattgtaaaaaagctaaaccagagtacatgcaagctgctga gaagttcaaagacgatggcaaggaagcagattttgtgaatttcatgaaggatccacagaatccgggagccacgccccctc cccccgccgcagaaccaccagagaaacagtgggctgacgtagcaggaatggaaaatctacatttcttgacagaagaaaat tttgacagttttatagaagaaaatccatctgtacttgtaatgttttatgctccatggtgtggacattgtaaggccatgaa gccggcatatggagaggctgctgccatgcttacaagtaaaggggacccggaatggagctcagtacccagtgccgtacaac acctggactctgctagctttaataaggtcctgaaggataaggccgcggccctagtcatgttttacgccccctggtgtgga cattgtaagaaggccaaaccacatttccagaatgccgctgacgaattagcgaagaaagataaaaatagaatatttgcagc tgtggattgtacgaaaaatgacgaaaaacttataattccagtcctgaaataa |
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Protein
| Protein ID | pfu_aug1.0_4606.1_52319.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4606.1_52319.t1 MEPNKVLLPLHHGAKQGRNLIEDVEDPKVFKKLIRTKTNLLAIFAKNDKAASKYNSIFADVALEMKGKATLAYIDCRDGN FNKDYDRRMVTKSMINFLLDPTGDVPWEEEPTATDVVHIDSPESFNKLLRKDKHPILVMFYAPLTYLSVKITGTLAAVDA TKEKKTGDSFKIQGFPTVKYFKDGEFAFDFNERTEDKILEFMKDPKEPPPPPAPEPNWSEMESEVVHLTDENFKSYLKKK KHALVMFYAPWCGHCKKAKPEYMQAAEKFKDDGKEADFVNFMKDPQNPGATPPPPAAEPPEKQWADVAGMENLHFLTEEN FDSFIEENPSVLVMFYAPWCGHCKAMKPAYGEAAAMLTSKGDPEWSSVPSAVQHLDSASFNKVLKDKAAALVMFYAPWCG HCKKAKPHFQNAADELAKKDKNRIFAAVDCTKNDEKLIIPVLK |
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