Gene
| Gene Model ID | pfu_aug1.0_45554.1_63231 |
|---|---|
| Locus | scaffold45554.1 : 1 ... 3917 : - |
| To GenomeBrowser | scaffold45554.1:1..3917 |
| Genes list of scaffold | scaffold45554.1 |
| Synonym | pfu_aug2.0_892.1_07993 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_45554.1_63231.t1 | 1 | 1 | RRM_1 | 63 | 123 | 2.7e-14 | 52.5 | 4.5e-18 | 3.3e-14 | 52.2 |
| pfu_aug1.0_45554.1_63231.t1 | 1 | 1 | RRM_6 | 63 | 123 | 1.9e-09 | 37.3 | 3.5e-13 | 2.6e-09 | 36.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_45554.1_63231.t1 | gi|348517383|ref|XP_003446213.1| | PREDICTED: RNA-binding protein 42-like isoform X1 [Oreochromis niloticus] | 6.0e-29 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_45554.1_63231.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_45554.1_63231.t1 atgatgccgccacgtggccctcccatgcctggaccacctggccctgcagggcattttggagggccaagacctggccccat tggaggtccaatgggtccagggccagcatatgggattagtactggggaggcacattcaatggcaaattttggacctgatg gaacagctgagggagatgattttcgaatattctgcggtgatcttggaaatgaggtcacagatgaagtactagcgcgagcc ttcagtaggtacccaacattcttaaaggccaaagtggtacgagacaagcggacaaataagacaaaaggctatggctttgt tagtttcagagatcctaatgactttgtacaggccatgagggatatgaatg |
|
Protein
| Protein ID | pfu_aug1.0_45554.1_63231.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_45554.1_63231.t1 MMPPRGPPMPGPPGPAGHFGGPRPGPIGGPMGPGPAYGISTGEAHSMANFGPDGTAEGDDFRIFCGDLGNEVTDEVLARA FSRYPTFLKAKVVRDKRTNKTKGYGFVSFRDPNDFVQAMRDMN |
|