Gene
| Gene Model ID | pfu_aug1.0_4543.1_01760 |
|---|---|
| Locus | scaffold4543.1 : 44388 ... 55715 : - |
| To GenomeBrowser | scaffold4543.1:44388..55715 |
| Genes list of scaffold | scaffold4543.1 |
| Synonym | pfu_aug2.0_852.1_07952 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4543.1_01760.t1 | 1 | 1 | Ras | 3 | 118 | 4.9e-28 | 97.5 | 1.1e-31 | 5.7e-28 | 97.3 |
| pfu_aug1.0_4543.1_01760.t1 | 1 | 1 | Miro | 3 | 66 | 2.2e-07 | 31.3 | 7.9e-11 | 3.9e-07 | 30.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4543.1_01760.t1 | gi|86277310|gb|ABC87998.1| | Rac GTPase [Schistosoma japonicum] | 2.0e-28 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_4543.1_01760.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4543.1_01760.t1 atgtttgtaatggacacagctggtcaagaaacctacgacagattaaggacactttcatattacgacacagacgtatttat agtgtgtttttcggttgacgatcaggactcatttgacaatgtgagaacgagatggataccagaaatcaaagaattccgac cgaacactccctttatcatggtaggtacccaaaccgatctcagacactcagttgtggacattacagacgcttgcgtatca tcagcgagaggcaaaaaagctgcaaagaaactaggtgccaaaaaatatatcgaatgtagttcagtagacggacaaggtac ggactatgtattcgaagtggcactaaagacggcgcaatctcccataggacagaagaaaatatggaaaagcatcaagagag ctttccggaaaaaagatgctgcagtttga |
|
Protein
| Protein ID | pfu_aug1.0_4543.1_01760.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4543.1_01760.t1 MFVMDTAGQETYDRLRTLSYYDTDVFIVCFSVDDQDSFDNVRTRWIPEIKEFRPNTPFIMVGTQTDLRHSVVDITDACVS SARGKKAAKKLGAKKYIECSSVDGQGTDYVFEVALKTAQSPIGQKKIWKSIKRAFRKKDAAV |
|