Gene
| Gene Model ID | pfu_aug1.0_4501.1_23591 |
|---|---|
| Locus | scaffold4501.1 : 17077 ... 20345 : - |
| To GenomeBrowser | scaffold4501.1:17077..20345 |
| Genes list of scaffold | scaffold4501.1 |
| Synonym | pfu_aug2.0_3349.1_32453 |
Manual annotation
| Study field | other |
|---|---|
| Gene name | calmodulin like |
| Description | Blast best hit to NCBI XP_003465878.1 (Cavia porcellus) |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4501.1_23591.t1 | 2 | 1 | EF-hand_4 | 11 | 27 | 5.0e-06 | 26.1 | 0.016 | 17.0 | 5.1 |
| pfu_aug1.0_4501.1_23591.t1 | 3 | 1 | EF-hand_1 | 14 | 29 | 9.0e-23 | 77.8 | 2.7e-07 | 0.00028 | 19.9 |
| pfu_aug1.0_4501.1_23591.t1 | 2 | 1 | EF-hand_7 | 14 | 27 | 7.1e-19 | 67.7 | 0.00031 | 0.33 | 11.1 |
| pfu_aug1.0_4501.1_23591.t1 | 3 | 1 | EF-hand_6 | 14 | 29 | 1.5e-16 | 58.7 | 5.1e-05 | 0.055 | 13.3 |
| pfu_aug1.0_4501.1_23591.t1 | 3 | 1 | EF-hand_5 | 14 | 27 | 6.5e-11 | 41.0 | 0.00029 | 0.31 | 10.4 |
| pfu_aug1.0_4501.1_23591.t1 | 2 | 1 | EF-hand_8 | 15 | 53 | 8.6e-21 | 73.3 | 4.0e-07 | 0.00043 | 19.8 |
| pfu_aug1.0_4501.1_23591.t1 | 2 | 1 | EF-hand_9 | 15 | 29 | 4.8e-08 | 32.7 | 0.04 | 42.0 | 4.1 |
| pfu_aug1.0_4501.1_23591.t1 | 2 | 2 | EF-hand_4 | 38 | 100 | 5.0e-06 | 26.1 | 1.7e-07 | 0.00018 | 21.1 |
| pfu_aug1.0_4501.1_23591.t1 | 3 | 2 | EF-hand_1 | 39 | 67 | 9.0e-23 | 77.8 | 1.5e-08 | 1.5e-05 | 23.9 |
| pfu_aug1.0_4501.1_23591.t1 | 3 | 2 | EF-hand_6 | 39 | 68 | 1.5e-16 | 58.7 | 1.2e-08 | 1.3e-05 | 24.6 |
| pfu_aug1.0_4501.1_23591.t1 | 2 | 2 | EF-hand_7 | 40 | 100 | 7.1e-19 | 67.7 | 8.8e-19 | 9.3e-16 | 57.7 |
| pfu_aug1.0_4501.1_23591.t1 | 3 | 2 | EF-hand_5 | 41 | 63 | 6.5e-11 | 41.0 | 0.00082 | 0.86 | 9.0 |
| pfu_aug1.0_4501.1_23591.t1 | 2 | 2 | EF-hand_9 | 43 | 101 | 4.8e-08 | 32.7 | 2.8e-09 | 2.9e-06 | 27.0 |
| pfu_aug1.0_4501.1_23591.t1 | 2 | 2 | EF-hand_8 | 52 | 101 | 8.6e-21 | 73.3 | 1.5e-19 | 1.6e-16 | 59.6 |
| pfu_aug1.0_4501.1_23591.t1 | 3 | 3 | EF-hand_1 | 75 | 101 | 9.0e-23 | 77.8 | 1.3e-11 | 1.4e-08 | 33.4 |
| pfu_aug1.0_4501.1_23591.t1 | 3 | 3 | EF-hand_6 | 75 | 101 | 1.5e-16 | 58.7 | 2.1e-06 | 0.0022 | 17.7 |
| pfu_aug1.0_4501.1_23591.t1 | 3 | 3 | EF-hand_5 | 80 | 100 | 6.5e-11 | 41.0 | 1.1e-06 | 0.0012 | 18.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4501.1_23591.t1 | gi|344269363|ref|XP_003406522.1| | 5.0e-32 |
Transcript
| Transcript ID | pfu_aug1.0_4501.1_23591.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4501.1_23591.t1 atgcgggatgacttggatctgtctgaagagcagatagcaggaaacggtacaatagattttgatgagttcctacagatgat ggccaagaagatgaaagacagtgactcagaagaggagatgaagcaagcttttaaggtgtttgattgggacaatactggat gtataactgctgagaacttacgtgttgtgatgacgaaccttggtgagaagatgacggatgaggagatagatgaaatggtc cgactggcagatgtgaatggcgatggatctgttaattatgatgaatttctcgccatgatgaccggggcagttcagtga |
|
Protein
| Protein ID | pfu_aug1.0_4501.1_23591.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4501.1_23591.t1 MRDDLDLSEEQIAGNGTIDFDEFLQMMAKKMKDSDSEEEMKQAFKVFDWDNTGCITAENLRVVMTNLGEKMTDEEIDEMV RLADVNGDGSVNYDEFLAMMTGAVQ |
|