Gene
| Gene Model ID | pfu_aug1.0_4501.1_23589 |
|---|---|
| Locus | scaffold4501.1 : 2637 ... 13485 : - |
| To GenomeBrowser | scaffold4501.1:2637..13485 |
| Genes list of scaffold | scaffold4501.1 |
| Synonym | pfu_aug2.0_3349.1_32452 |
Manual annotation
| Study field | other |
|---|---|
| Gene name | calmodulin like |
| Description | Blast best hit to DDBJ BC058485 (Rattus norvegicus ) |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4501.1_23589.t1 | 2 | 1 | EF-hand_4 | 5 | 70 | 6.2e-09 | 35.5 | 0.00013 | 0.11 | 12.2 |
| pfu_aug1.0_4501.1_23589.t1 | 2 | 1 | EFhand_Ca_insen | 6 | 73 | 4.7e-06 | 26.4 | 0.012 | 10.0 | 6.1 |
| pfu_aug1.0_4501.1_23589.t1 | 4 | 1 | EF-hand_1 | 12 | 40 | 3.3e-40 | 132.3 | 1.7e-10 | 1.4e-07 | 30.3 |
| pfu_aug1.0_4501.1_23589.t1 | 4 | 1 | EF-hand_6 | 12 | 41 | 7.8e-31 | 103.1 | 2.3e-11 | 1.9e-08 | 33.4 |
| pfu_aug1.0_4501.1_23589.t1 | 2 | 1 | EF-hand_7 | 13 | 72 | 7.1e-35 | 118.9 | 2.9e-15 | 2.3e-12 | 46.8 |
| pfu_aug1.0_4501.1_23589.t1 | 4 | 1 | EF-hand_8 | 14 | 32 | 3.9e-30 | 103.2 | 0.00018 | 0.15 | 11.6 |
| pfu_aug1.0_4501.1_23589.t1 | 4 | 1 | EF-hand_5 | 15 | 33 | 2.0e-26 | 90.0 | 1.9e-08 | 1.5e-05 | 24.0 |
| pfu_aug1.0_4501.1_23589.t1 | 2 | 1 | EF-hand_9 | 16 | 73 | 3.5e-10 | 39.6 | 2.6e-08 | 2.1e-05 | 24.3 |
| pfu_aug1.0_4501.1_23589.t1 | 2 | 1 | SPARC_Ca_bdg | 16 | 70 | 3.3e-09 | 36.7 | 4.8e-05 | 0.04 | 13.9 |
| pfu_aug1.0_4501.1_23589.t1 | 4 | 2 | EF-hand_8 | 25 | 75 | 3.9e-30 | 103.2 | 5.3e-14 | 4.4e-11 | 42.2 |
| pfu_aug1.0_4501.1_23589.t1 | 2 | 1 | UPF0154 | 28 | 58 | 3.5e-06 | 26.5 | 0.0013 | 1.0 | 9.0 |
| pfu_aug1.0_4501.1_23589.t1 | 4 | 2 | EF-hand_1 | 48 | 75 | 3.3e-40 | 132.3 | 8.7e-12 | 7.2e-09 | 34.3 |
| pfu_aug1.0_4501.1_23589.t1 | 4 | 2 | EF-hand_6 | 50 | 74 | 7.8e-31 | 103.1 | 4.8e-07 | 0.00039 | 20.0 |
| pfu_aug1.0_4501.1_23589.t1 | 4 | 2 | EF-hand_5 | 52 | 71 | 2.0e-26 | 90.0 | 3.5e-06 | 0.0029 | 16.8 |
| pfu_aug1.0_4501.1_23589.t1 | 2 | 2 | SPARC_Ca_bdg | 77 | 144 | 3.3e-09 | 36.7 | 2.5e-07 | 0.0002 | 21.3 |
| pfu_aug1.0_4501.1_23589.t1 | 2 | 2 | EFhand_Ca_insen | 81 | 145 | 4.7e-06 | 26.4 | 6.0e-07 | 0.00049 | 20.0 |
| pfu_aug1.0_4501.1_23589.t1 | 4 | 3 | EF-hand_8 | 84 | 108 | 3.9e-30 | 103.2 | 6.3e-07 | 0.00052 | 19.5 |
| pfu_aug1.0_4501.1_23589.t1 | 2 | 2 | EF-hand_4 | 84 | 147 | 6.2e-09 | 35.5 | 2.3e-07 | 0.00019 | 21.1 |
| pfu_aug1.0_4501.1_23589.t1 | 4 | 3 | EF-hand_1 | 86 | 113 | 3.3e-40 | 132.3 | 1.3e-13 | 1.1e-10 | 40.0 |
| pfu_aug1.0_4501.1_23589.t1 | 4 | 3 | EF-hand_6 | 86 | 114 | 7.8e-31 | 103.1 | 1.2e-11 | 9.6e-09 | 34.4 |
| pfu_aug1.0_4501.1_23589.t1 | 2 | 2 | EF-hand_7 | 87 | 147 | 7.1e-35 | 118.9 | 1.4e-24 | 1.1e-21 | 76.6 |
| pfu_aug1.0_4501.1_23589.t1 | 4 | 3 | EF-hand_5 | 87 | 111 | 2.0e-26 | 90.0 | 4.6e-11 | 3.8e-08 | 32.3 |
| pfu_aug1.0_4501.1_23589.t1 | 2 | 2 | EF-hand_9 | 90 | 147 | 3.5e-10 | 39.6 | 6.1e-05 | 0.05 | 13.5 |
| pfu_aug1.0_4501.1_23589.t1 | 4 | 4 | EF-hand_8 | 99 | 147 | 3.9e-30 | 103.2 | 3.2e-19 | 2.6e-16 | 58.9 |
| pfu_aug1.0_4501.1_23589.t1 | 2 | 2 | UPF0154 | 99 | 130 | 3.5e-06 | 26.5 | 1.4e-05 | 0.012 | 15.2 |
| pfu_aug1.0_4501.1_23589.t1 | 4 | 4 | EF-hand_1 | 122 | 148 | 3.3e-40 | 132.3 | 1.5e-12 | 1.2e-09 | 36.7 |
| pfu_aug1.0_4501.1_23589.t1 | 4 | 4 | EF-hand_5 | 126 | 147 | 2.0e-26 | 90.0 | 4.5e-07 | 0.00037 | 19.7 |
| pfu_aug1.0_4501.1_23589.t1 | 4 | 4 | EF-hand_6 | 128 | 148 | 7.8e-31 | 103.1 | 6.4e-06 | 0.0052 | 16.5 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
| Dshape | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_4501.1_23589.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4501.1_23589.t1 atggccaatagatttacagaggaacagatactagaatatcaggaggcctttaacctgttcgacaaggatagggacggcaa cattaccacggaggagcttggcatcgtcatgagatcactgggacaaacacccacagacatggaactcaaaaatatgatca aagaaatagacgccgacggtaacggtgcaatagacttcaacgaattccttgacatgttggcgaagaaacaggaagaaaac gccgacccggaacaggaactgaaggaagcattccaagtgttcgataaagacggaaacgggtatatcagcaaagaagaact gcgtcacgtgatgattaatctcggagagaaactcacggacgaggaggtggacgagatgatgcaggaagcagatacagacg gtgatggtcaagttaattataaagaatttgtacagatgatgggtacagtgtctcggacttgtgatacgtga |
|
Protein
| Protein ID | pfu_aug1.0_4501.1_23589.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4501.1_23589.t1 MANRFTEEQILEYQEAFNLFDKDRDGNITTEELGIVMRSLGQTPTDMELKNMIKEIDADGNGAIDFNEFLDMLAKKQEEN ADPEQELKEAFQVFDKDGNGYISKEELRHVMINLGEKLTDEEVDEMMQEADTDGDGQVNYKEFVQMMGTVSRTCDT |
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