Gene
| Gene Model ID | pfu_aug1.0_4112.1_52186 |
|---|---|
| Locus | scaffold4112.1 : 19446 ... 22564 : + |
| To GenomeBrowser | scaffold4112.1:19446..22564 |
| Genes list of scaffold | scaffold4112.1 |
| Synonym | NA |
Manual annotation
| Study field | Transcription Factors |
|---|---|
| Gene name | Pfu-twist2 |
| Description | Best hit to CAA67664 B-HLH DNA binding protein [Homo sapiens] with 3e-16 by a BLASTP search against NCBI Homo sapiens nr database. This annotation is based on NJ, ML, and BI. EST assembled sequence was used for analyses. |
| mRNA evidence | pfudmixc33292g09873 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4112.1_52186.t1 | 1 | 1 | HLH | 107 | 136 | 2.8e-09 | 36.5 | 7.1e-13 | 5.3e-09 | 35.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4112.1_52186.t1 | gi|58585216|ref|NP_001011637.1| | twist [Apis mellifera] | 5.0e-13 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| Dshape | 1 |
Transcript
| Transcript ID | pfu_aug1.0_4112.1_52186.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4112.1_52186.t1 atggttccacagcagaaccccttactgactgatctggacgattataatttgaatggtcagtctggacatgatctgatttt gaatttatcaaatgtgaaaactgaattcgctgattcgtatgaaaactacccggtgagttaccaagtggactacggtaaat cccgaggtaaaaagaggaaaagatccggaagttcaaataaatcatgtgacagtttttcggatgcttgttcgccggctact tctgaaaattcgctcgagggacctctgaccaagaaaccccgacagaaagcacagaaaaccttagctgatattcaaacaca gagaacaatggcaaatgtgcgtgaacgtcaaaggactcagtcattaaacgaagcattcgctcagctacgtaaaataattc ctacacttccagagagttga |
|
Protein
| Protein ID | pfu_aug1.0_4112.1_52186.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4112.1_52186.t1 MVPQQNPLLTDLDDYNLNGQSGHDLILNLSNVKTEFADSYENYPVSYQVDYGKSRGKKRKRSGSSNKSCDSFSDACSPAT SENSLEGPLTKKPRQKAQKTLADIQTQRTMANVRERQRTQSLNEAFAQLRKIIPTLPES |
|