Gene
| Gene Model ID | pfu_aug1.0_405.1_07522 |
|---|---|
| Locus | scaffold405.1 : 56646 ... 69088 : + |
| To GenomeBrowser | scaffold405.1:56646..69088 |
| Genes list of scaffold | scaffold405.1 |
| Synonym | pfu_aug2.0_370.1_00662 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_405.1_07522.t1 | 2 | 1 | RhoGAP | 58 | 208 | 4.1e-26 | 91.4 | 4.7e-29 | 1.7e-25 | 89.3 |
| pfu_aug1.0_405.1_07522.t1 | 2 | 1 | SH2 | 271 | 344 | 2.3e-35 | 120.2 | 2.6e-22 | 9.8e-19 | 66.9 |
| pfu_aug1.0_405.1_07522.t1 | 2 | 2 | RhoGAP | 350 | 382 | 4.1e-26 | 91.4 | 0.56 | 2100.0 | -1.8 |
| pfu_aug1.0_405.1_07522.t1 | 2 | 2 | SH2 | 545 | 618 | 2.3e-35 | 120.2 | 3.8e-17 | 1.4e-13 | 50.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_405.1_07522.t1 | gi|260823974|ref|XP_002606943.1| | hypothetical protein BRAFLDRAFT_91712 [Branchiostoma floridae] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_405.1_07522.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_405.1_07522.t1 atgtacctttgtacatacaaagtttgcattgatgaattatgtggaaatgatccagattcgaggccctatgctacaagttt accaggatctggacaaattgtcgacatgggcgatgattccagttttggagctgatcttacagaggaggcatccaagagtc agtatgaagctccttgggtgatcgtcaaatgtgccgatgaaatagaaaaatggtgccacaaccaccagactgagtcacta agtgtgtatcgaatttacgccaagtctgaagaggtgaatgaaattaaatctgaatttaacctagtctcagacccagcaca agtaaaccttgcccagtttaacgttcacggagtagcaggtgccatgaagaagtatctgagagaactcccgaacccattaa ttcctgtcgagatgtatgatgacttcatcaaagcagctgggagcaataatgatcggacaaaactccttttggatttggtt ggtcagttgcccaatgcccacaaatcaacccttaagtacctcatggcacacttcctgcgcttgtggtggatccagcacga gtcaggggtggaagatggattggacaaattatctcatgtattttgccatatactcttgcgacctccatgggaaaaaatca tagagatagttgagaacactaagctacatatagagatatttgaagatttgctcaagaacggcccctggggtgaagcagca cccccccttccacctgttgcccctccacgccccaagtcacctattcaggaattacctatgtcagcccaggagaaactaaa agaagcggaatggtactggggaaaaatatccagagaggaagtgaacgaactgctgtgtgacaaacctgacggaacttttc tagtgcgagatgctacgtcacctggggattatactttgacactccgtaaggggggaacaaacaaactgatcaaaatatat cagaaagatggaaaatatggttttgtggaacctttgacttttgattcagtggtggatttggtgacattttaccgacatac ctcattggcaatatataatagaactttagatactaaactcctctatccagtctccaagaatgtggctccaacggaagcct catcagaagatgtagcagagcagctagaaaaattaaaatgggtcaatgccgagcatttgaaaaagatgaaggaatatgac cgccagtacgaaaatcacgccaggatcaatcaggagttgcaactcaaacaccaggccctggacgcatttaaagaaaccgt gacagtatttgaagaacagatggaattacatcggcgacatcacgctgaggtccaagtccatgaactccataggttatcag aaaattttgagttgctgaaaagtcgttggttaagcatccaggaaagtcgccagcagttggaaattgatatcaacaaaaag acgactctgaataggaatttgatcagtgaaatgaacagcttacgtcctgaaataaaacgtcttcataaacagcgagacca gctgaagaaaatgttgttagaaagtggatattctgctgataaattagacgacattctagaggaagaaagtgagtccatca ggccccacaataacaagagcctgtggtttgtggatgtggatagggcaaatgcagagaagcttttagagggaagaaaggac ggcaccttcctcatcagaccaaggaagaacgatcctaccagcgaatacgctctttcaatcaggtgcaatcagaaagtagg tcactgcaagatatatcacaatgcacaaggacatgttggcttcacggagggcaattgtgactgtgccgatatcactagtc tggtacagcattatcagcgggaatccttagtggaacataataaagacttggatgtacgcatgttgtaccctgttagagat gaaaacccagaaacgaactacttatccatgaaaaatcagtga |
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Protein
| Protein ID | pfu_aug1.0_405.1_07522.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_405.1_07522.t1 MYLCTYKVCIDELCGNDPDSRPYATSLPGSGQIVDMGDDSSFGADLTEEASKSQYEAPWVIVKCADEIEKWCHNHQTESL SVYRIYAKSEEVNEIKSEFNLVSDPAQVNLAQFNVHGVAGAMKKYLRELPNPLIPVEMYDDFIKAAGSNNDRTKLLLDLV GQLPNAHKSTLKYLMAHFLRLWWIQHESGVEDGLDKLSHVFCHILLRPPWEKIIEIVENTKLHIEIFEDLLKNGPWGEAA PPLPPVAPPRPKSPIQELPMSAQEKLKEAEWYWGKISREEVNELLCDKPDGTFLVRDATSPGDYTLTLRKGGTNKLIKIY QKDGKYGFVEPLTFDSVVDLVTFYRHTSLAIYNRTLDTKLLYPVSKNVAPTEASSEDVAEQLEKLKWVNAEHLKKMKEYD RQYENHARINQELQLKHQALDAFKETVTVFEEQMELHRRHHAEVQVHELHRLSENFELLKSRWLSIQESRQQLEIDINKK TTLNRNLISEMNSLRPEIKRLHKQRDQLKKMLLESGYSADKLDDILEEESESIRPHNNKSLWFVDVDRANAEKLLEGRKD GTFLIRPRKNDPTSEYALSIRCNQKVGHCKIYHNAQGHVGFTEGNCDCADITSLVQHYQRESLVEHNKDLDVRMLYPVRD ENPETNYLSMKNQ |
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