Gene
| Gene Model ID | pfu_aug1.0_3957.1_23445 |
|---|---|
| Locus | scaffold3957.1 : 15056 ... 48568 : + |
| To GenomeBrowser | scaffold3957.1:15056..48568 |
| Genes list of scaffold | scaffold3957.1 |
| Synonym | pfu_aug2.0_5.1_16662 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3957.1_23445.t1 | 2 | 1 | RRM_1 | 28 | 92 | 6.6e-30 | 102.5 | 1.2e-19 | 3.5e-16 | 58.6 |
| pfu_aug1.0_3957.1_23445.t1 | 2 | 1 | RRM_6 | 28 | 88 | 2.5e-22 | 78.6 | 9.5e-16 | 2.8e-12 | 46.4 |
| pfu_aug1.0_3957.1_23445.t1 | 2 | 1 | RRM_5 | 42 | 88 | 6.4e-12 | 45.1 | 1.0e-09 | 3.0e-06 | 26.9 |
| pfu_aug1.0_3957.1_23445.t1 | 2 | 2 | RRM_1 | 107 | 173 | 6.6e-30 | 102.5 | 1.7e-14 | 5.1e-11 | 42.0 |
| pfu_aug1.0_3957.1_23445.t1 | 2 | 2 | RRM_6 | 107 | 170 | 2.5e-22 | 78.6 | 1.0e-10 | 3.1e-07 | 30.2 |
| pfu_aug1.0_3957.1_23445.t1 | 2 | 2 | RRM_5 | 124 | 176 | 6.4e-12 | 45.1 | 2.5e-06 | 0.0075 | 16.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3957.1_23445.t1 | gi|242012562|ref|XP_002427001.1| | predicted protein [Pediculus humanus corporis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_3957.1_23445.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3957.1_23445.t1 atgcctgcggccagtcccaatacgacgagtagtcagtccagtaaccagagtcaatccggggatcaacttagcagaactaa tttatatatacgagggcttaatcctaacacaacagataaagatttagtcaatttatgccaaccatatggcaaaattattt ccacgaaagctatattagaccaaacaactaataaatgtaaaggttatggctttgtcgacttcgaatctcccaatgcagca gaagttgccgtccaggctttacaatcacaaggaattcaagctcagatggccaagcaacaggaacaggaccctacaaatct atatatagccaatctgcctatttattttgctgagaccaatttagagaatatgttcaaagaatatggaactgtgatttcaa cccgaattttacggaaacctgacggaattagccgaggtgtcggtttcagccgaatggaatcaaaagaaaaatgcgagcaa attatcaacgctttcaacggaaaaattttaccaggtgagaatcctcttttttggagagatgatgacagaaaatttaaaag taaaaaggataaggatcagatgaggtga |
|
Protein
| Protein ID | pfu_aug1.0_3957.1_23445.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3957.1_23445.t1 MPAASPNTTSSQSSNQSQSGDQLSRTNLYIRGLNPNTTDKDLVNLCQPYGKIISTKAILDQTTNKCKGYGFVDFESPNAA EVAVQALQSQGIQAQMAKQQEQDPTNLYIANLPIYFAETNLENMFKEYGTVISTRILRKPDGISRGVGFSRMESKEKCEQ IINAFNGKILPGENPLFWRDDDRKFKSKKDKDQMR |
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