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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_38123.1_70258
Locus scaffold38123.1 : 1 ... 6142 : +
To GenomeBrowser scaffold38123.1:1..6142
Genes list of scaffold scaffold38123.1
Synonym pfu_aug2.0_164.1_13710

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_38123.1_70258.t1 1 1 Nol1_Nop2_Fmu 109 290 4.2e-39 134.6 5.5001e-42 5.5e-39 134.2
pfu_aug1.0_38123.1_70258.t1 1 1 FtsJ 122 280 4.9e-07 29.9 7.6e-10 7.5e-07 29.2
pfu_aug1.0_38123.1_70258.t1 1 1 Methyltransf_31 125 275 1.9e-10 40.5 5.7e-13 5.6e-10 38.9
pfu_aug1.0_38123.1_70258.t1 1 1 Methyltransf_18 126 263 1.7e-08 35.0 4.4e-11 4.3e-08 33.7
pfu_aug1.0_38123.1_70258.t1 1 1 Methyltransf_26 128 263 2.9e-07 30.5 7.7e-10 7.6e-07 29.1

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_38123.1_70258.t1 gi|260783662|ref|XP_002586892.1| hypothetical protein BRAFLDRAFT_116066 [Branchiostoma floridae] 0.0

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 1
>Adult tissues
maleGonad 1

Transcript
Transcript IDpfu_aug1.0_38123.1_70258.t1
Definition-
>pfu_aug1.0_38123.1_70258.t1
agtgaaaaagaagtgattgtagatttatcatgcggcatgtcggtgttacgtggtgctgatgtcttcgtgcagggaatcat
gggagcaccaccaaacatgctcgccggtgaccatgtttctgtgtatgcagatttagacggtaaatgcctgaagggatcaa
ataaagtctacactggaaataagacatatgttggtaatggagtcgctcaacgtagtcgtgctgaaatcttcaaaactgaa
aatcctttaagtggtgtaggagttcttatgactgagcctttatatgaagcccccagcctcagtgacttgtccccccacat
tacatatccccagaacttcccctcggcggtatgtgtgacggtgttagacccccaaccaggggaggtcatcctggatatgt
gtgcggctcctggagggaagacaactcatatagcaactaacatgaaggataagggacgggttgtagctatagacaagaca
gaacagaagataagcagagtgaaaagaaatgctgacaattggaatcttacctgtatagagtgctatgccttcgattcaac
aaaatcctgtgatgtcaattctgattgtaataatgggccaccctatccaccagagacgtttgataggatactattggacg
caccctgtagtgctttgggtcagaggccttcactcaaaaaccccatgtccctgaagacactaaagtcacaccctgtatgt
cagagaaagctgctggaaaaggcagtagatctattgaagcctggtggagtattagtgtacagtacatgtaccataacact
ggaagagaacgaggaacaagtagcatgggccatcaataaattcccgtgcttgactctagatgaacagatcatctatcagc
agaataccttctgcaacccagaaaaccgaggcagacaacatatcaatcagccctcatag

Protein
Protein IDpfu_aug1.0_38123.1_70258.t1
Definition-
>pfu_aug1.0_38123.1_70258.t1
SEKEVIVDLSCGMSVLRGADVFVQGIMGAPPNMLAGDHVSVYADLDGKCLKGSNKVYTGNKTYVGNGVAQRSRAEIFKTE
NPLSGVGVLMTEPLYEAPSLSDLSPHITYPQNFPSAVCVTVLDPQPGEVILDMCAAPGGKTTHIATNMKDKGRVVAIDKT
EQKISRVKRNADNWNLTCIECYAFDSTKSCDVNSDCNNGPPYPPETFDRILLDAPCSALGQRPSLKNPMSLKTLKSHPVC
QRKLLEKAVDLLKPGGVLVYSTCTITLEENEEQVAWAINKFPCLTLDEQIIYQQNTFCNPENRGRQHINQPS

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