Gene
| Gene Model ID | pfu_aug1.0_35744.1_12230 |
|---|---|
| Locus | scaffold35744.1 : 783 ... 6561 : - |
| To GenomeBrowser | scaffold35744.1:783..6561 |
| Genes list of scaffold | scaffold35744.1 |
| Synonym | pfu_aug2.0_2481.1_05551 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_35744.1_12230.t1 | 1 | 1 | Serinc | 19 | 166 | 0.0 | 200.2 | 0.0 | 0.0 | 199.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_35744.1_12230.t1 | gi|260815317|ref|XP_002602420.1| | hypothetical protein BRAFLDRAFT_117027 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 3 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
Transcript
| Transcript ID | pfu_aug1.0_35744.1_12230.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_35744.1_12230.t1 atcccgggcctgtgtaaagattttataggcgtgaacgagtacctgaaagttgattctccgtataagatagcacactgtga tgaggtggtcggctacctctccgtgtataggatttgctttgcattggcgggatttttcctcctgttctgcctcatcatga tcaacgtaaaatcttcgaaggatccaagatctgggatacagaacgggttctgggcaatcaaaatcattgtcctgataggg atctgtgtgggggcattcttcatcccaaggggatcgtttggaatagctctgatgtggatagggttgattggagctttcct gttcatcatcatacagctgatcctgttgattgactttgctcacggctgggcagaaagttgggtggagaaacacgaagaaa cggagtcaaaatgctattactttggcttgctgtttttcacgattattttctatctcgtcggaatcaccatggtggtccta ttttacatcttctatggaacagtgagtacattatggccagaatttaaaagtgtctgtgttcatttatatctttaa |
|
Protein
| Protein ID | pfu_aug1.0_35744.1_12230.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_35744.1_12230.t1 IPGLCKDFIGVNEYLKVDSPYKIAHCDEVVGYLSVYRICFALAGFFLLFCLIMINVKSSKDPRSGIQNGFWAIKIIVLIG ICVGAFFIPRGSFGIALMWIGLIGAFLFIIIQLILLIDFAHGWAESWVEKHEETESKCYYFGLLFFTIIFYLVGITMVVL FYIFYGTVSTLWPEFKSVCVHLYL |
|