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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_3550.1_16132
Locus scaffold3550.1 : 37513 ... 46065 : -
To GenomeBrowser scaffold3550.1:37513..46065
Genes list of scaffold scaffold3550.1
Synonym NA

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_3550.1_16132.t1 2 1 AF-4 12 65 8.8e-25 86.8 1.2e-07 0.00091 17.2
pfu_aug1.0_3550.1_16132.t1 2 2 AF-4 55 142 8.8e-25 86.8 1.9e-24 1.4e-20 72.8

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_3550.1_16132.t1 gi|158298949|ref|XP_553840.2| AGAP009950-PA [Anopheles gambiae str. PEST] 4.0e-17

Transcript
Transcript IDpfu_aug1.0_3550.1_16132.t1
Definition-
>pfu_aug1.0_3550.1_16132.t1
atgaaaatattcattactgcagttgagcacagtttacgtatccagtcattactatgcctaaaattattcaaattgaagaa
agttgaaactatgaaactcaagaaggctattgacgaatataataaggggagtgatctcataccttccaaactgcctaacg
gaaatgctgcctcgtgtgtatccatgtcgtcccccgctccgggcgtggtcagtgtcccccagagaatacattccctcacc
cagcagtacctctcctccactaatgtcctggttcagtgccatgacttctgggaccaggctgatgtaaatatgcaggagta
tcaagagttctttgaagaagtggatgaacaatgtggtgcattatctttacacagtagcatactggatctagtgttctatg
ttcaaagtggtctacaaaagctcaaagatgtatga

Protein
Protein IDpfu_aug1.0_3550.1_16132.t1
Definition-
>pfu_aug1.0_3550.1_16132.t1
MKIFITAVEHSLRIQSLLCLKLFKLKKVETMKLKKAIDEYNKGSDLIPSKLPNGNAASCVSMSSPAPGVVSVPQRIHSLT
QQYLSSTNVLVQCHDFWDQADVNMQEYQEFFEEVDEQCGALSLHSSILDLVFYVQSGLQKLKDV

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