Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_3529.1_52008
Locus scaffold3529.1 : 53046 ... 67080 : +
To GenomeBrowser scaffold3529.1:53046..67080
Genes list of scaffold scaffold3529.1
Synonym pfu_aug2.0_23.1_10107

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_3529.1_52008.t1 3 1 TPR_15 42 110 3.9e-07 29.4 4.2e-05 0.032 13.2
pfu_aug1.0_3529.1_52008.t1 3 1 TPR_11 43 107 4.6e-27 93.4 6.6e-16 5.1e-13 48.4
pfu_aug1.0_3529.1_52008.t1 5 1 TPR_14 43 81 6.6e-17 60.4 1.5e-05 0.012 16.2
pfu_aug1.0_3529.1_52008.t1 4 1 TPR_1 44 70 4.4e-21 73.5 0.00068 0.53 9.9
pfu_aug1.0_3529.1_52008.t1 5 1 TPR_2 44 70 1.3e-19 68.4 0.00013 0.1 12.5
pfu_aug1.0_3529.1_52008.t1 4 1 TPR_12 45 106 1.0e-11 44.5 3.6e-07 0.00028 20.7
pfu_aug1.0_3529.1_52008.t1 4 1 TPR_16 46 108 7.0e-17 61.6 3.7e-10 2.9e-07 30.9
pfu_aug1.0_3529.1_52008.t1 5 1 TPR_17 46 63 2.0e-13 49.4 0.27 210.0 2.4
pfu_aug1.0_3529.1_52008.t1 4 1 TPR_19 52 108 1.8e-13 50.5 1.1e-07 8.3e-05 22.8
pfu_aug1.0_3529.1_52008.t1 5 1 TPR_8 55 75 3.1e-14 51.5 0.4 310.0 1.5
pfu_aug1.0_3529.1_52008.t1 3 1 Apc3 56 138 9.3e-09 35.3 1.8e-06 0.0014 18.6
pfu_aug1.0_3529.1_52008.t1 3 1 TPR_9 58 108 7.6e-11 41.7 0.00037 0.29 11.0
pfu_aug1.0_3529.1_52008.t1 5 2 TPR_17 65 95 2.0e-13 49.4 6.6e-06 0.0052 16.8
pfu_aug1.0_3529.1_52008.t1 4 2 TPR_1 78 109 4.4e-21 73.5 6.6e-09 5.1e-06 25.8
pfu_aug1.0_3529.1_52008.t1 5 2 TPR_2 78 108 1.3e-19 68.4 2.1e-06 0.0017 18.1
pfu_aug1.0_3529.1_52008.t1 5 2 TPR_8 78 109 3.1e-14 51.5 1.1e-06 0.00087 18.9
pfu_aug1.0_3529.1_52008.t1 5 2 TPR_14 79 110 6.6e-17 60.4 0.0013 1.0 10.1
pfu_aug1.0_3529.1_52008.t1 4 2 TPR_16 80 137 7.0e-17 61.6 1.3e-05 0.01 16.4
pfu_aug1.0_3529.1_52008.t1 4 2 TPR_19 94 143 1.8e-13 50.5 0.0032 2.5 8.5
pfu_aug1.0_3529.1_52008.t1 5 3 TPR_17 112 137 2.0e-13 49.4 0.00061 0.48 10.7
pfu_aug1.0_3529.1_52008.t1 3 2 TPR_9 112 140 7.6e-11 41.7 0.0024 1.8 8.4
pfu_aug1.0_3529.1_52008.t1 3 2 TPR_11 117 175 4.6e-27 93.4 2.9e-07 0.00023 20.7
pfu_aug1.0_3529.1_52008.t1 5 3 TPR_2 117 138 1.3e-19 68.4 0.0011 0.88 9.6
pfu_aug1.0_3529.1_52008.t1 5 3 TPR_14 117 156 6.6e-17 60.4 0.01 8.0 7.4
pfu_aug1.0_3529.1_52008.t1 4 2 TPR_12 119 171 1.0e-11 44.5 0.00022 0.17 11.8
pfu_aug1.0_3529.1_52008.t1 5 3 TPR_8 120 137 3.1e-14 51.5 0.0063 4.9 7.1
pfu_aug1.0_3529.1_52008.t1 3 2 TPR_15 122 182 3.9e-07 29.4 0.15 110.0 1.6
pfu_aug1.0_3529.1_52008.t1 4 3 TPR_1 123 137 4.4e-21 73.5 0.004 3.1 7.5
pfu_aug1.0_3529.1_52008.t1 3 2 Apc3 123 170 9.3e-09 35.3 0.0088 6.9 6.8
pfu_aug1.0_3529.1_52008.t1 4 3 TPR_16 129 171 7.0e-17 61.6 0.071 55.0 4.5
pfu_aug1.0_3529.1_52008.t1 5 4 TPR_2 152 170 1.3e-19 68.4 0.13 100.0 3.1
pfu_aug1.0_3529.1_52008.t1 5 4 TPR_8 152 171 3.1e-14 51.5 0.084 65.0 3.6
pfu_aug1.0_3529.1_52008.t1 5 4 TPR_17 153 171 2.0e-13 49.4 0.58 460.0 1.4
pfu_aug1.0_3529.1_52008.t1 3 3 TPR_11 189 239 4.6e-27 93.4 2.6e-08 2.1e-05 24.0
pfu_aug1.0_3529.1_52008.t1 5 4 TPR_14 189 212 6.6e-17 60.4 0.18 140.0 3.5
pfu_aug1.0_3529.1_52008.t1 4 4 TPR_16 189 239 7.0e-17 61.6 1.4e-07 0.00011 22.7
pfu_aug1.0_3529.1_52008.t1 4 3 TPR_19 189 246 1.8e-13 50.5 1.9e-07 0.00015 22.0
pfu_aug1.0_3529.1_52008.t1 3 3 Apc3 190 263 9.3e-09 35.3 1.8e-05 0.014 15.4
pfu_aug1.0_3529.1_52008.t1 3 3 TPR_9 193 245 7.6e-11 41.7 1.6e-06 0.0012 18.6
pfu_aug1.0_3529.1_52008.t1 5 5 TPR_17 201 230 2.0e-13 49.4 0.0003 0.23 11.7
pfu_aug1.0_3529.1_52008.t1 4 4 TPR_1 210 242 4.4e-21 73.5 8.5e-09 6.6e-06 25.5
pfu_aug1.0_3529.1_52008.t1 5 5 TPR_2 210 242 1.3e-19 68.4 2.3e-08 1.8e-05 24.2
pfu_aug1.0_3529.1_52008.t1 5 5 TPR_14 210 249 6.6e-17 60.4 6.5e-07 0.00051 20.4
pfu_aug1.0_3529.1_52008.t1 4 3 TPR_12 210 238 1.0e-11 44.5 9.9e-05 0.077 12.9
pfu_aug1.0_3529.1_52008.t1 3 3 TPR_15 211 249 3.9e-07 29.4 0.00027 0.21 10.6
pfu_aug1.0_3529.1_52008.t1 5 5 TPR_8 212 241 3.1e-14 51.5 7.7e-06 0.006 16.2
pfu_aug1.0_3529.1_52008.t1 4 4 TPR_12 241 258 1.0e-11 44.5 0.94 740.0 0.1
pfu_aug1.0_3529.1_52008.t1 2 1 DnaJ 243 262 1.9e-19 69.1 0.38 300.0 1.2
pfu_aug1.0_3529.1_52008.t1 4 4 TPR_19 249 263 1.8e-13 50.5 0.92 720.0 0.6
pfu_aug1.0_3529.1_52008.t1 2 2 DnaJ 263 321 1.9e-19 69.1 2.4e-22 1.9e-19 69.1

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_3529.1_52008.t1 gi|297694295|ref|XP_002824422.1| 0.0

Transcript
Transcript IDpfu_aug1.0_3529.1_52008.t1
Definition- 
>pfu_aug1.0_3529.1_52008.t1
atggatgaaagaaagatgacagaatggaatgtaaaccgaataatcttcttttccaaatcgtttgttttgtttcttttatc
tctggatgtttacctcagtggaattgaaggcgctagtagtgaagttgagcagcatttagaactagggaagaaacttttag
cagctgggcaattggcagatgccctacagcactaccatgcagctgtcgatggggacccatcaaattacctgacatatttt
agaagagccacagtttatttagcgttaggcaaatctaaatctgctcttccagatttacagaaagtcatcgaattaaaacc
agattttacagctgtttccccttgggatccagaattacatgaaacacgagcagagtgctacgagtctataggtgaatacg
ccaaagccataacggaaatccgaccaacgacttcattacgcaacgataataggaaagcatatttcaaaatgagtatacta
cactacgatctaggggaagccgatgaatctttgatggctgatttaacgccttatcttaacagctccttatcatctccaag
tataggaaatacaaaagatgcattccagatgtgtaattatatattagatcgttcaccagaagatatggatgccctgatgg
acagggcggagacttatctcggaaacgatcagtttgatgaagctataaaagactatcagaaagctgtgaatatagacggt
gataatagacgagcccaggaggggcttaacaaagctcaaaaattactcaaacagtccaaaaagagagattattataaaat
attaggagtaaaaagaactgctactactaagcagattaagagtgcatataagaaattggcagctaaatggcatccagaca
aatataaaggagaggaaaaatctctagcagagaagaaattcatagatatagcagcagctaaagaagtattaacagataaa
gatatttaa

Protein
Protein IDpfu_aug1.0_3529.1_52008.t1
Definition- 
>pfu_aug1.0_3529.1_52008.t1
MDERKMTEWNVNRIIFFSKSFVLFLLSLDVYLSGIEGASSEVEQHLELGKKLLAAGQLADALQHYHAAVDGDPSNYLTYF
RRATVYLALGKSKSALPDLQKVIELKPDFTAVSPWDPELHETRAECYESIGEYAKAITEIRPTTSLRNDNRKAYFKMSIL
HYDLGEADESLMADLTPYLNSSLSSPSIGNTKDAFQMCNYILDRSPEDMDALMDRAETYLGNDQFDEAIKDYQKAVNIDG
DNRRAQEGLNKAQKLLKQSKKRDYYKILGVKRTATTKQIKSAYKKLAAKWHPDKYKGEEKSLAEKKFIDIAAAKEVLTDK
DI

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