Gene
| Gene Model ID | pfu_aug1.0_327.1_50801 |
|---|---|
| Locus | scaffold327.1 : 44076 ... 45852 : + |
| To GenomeBrowser | scaffold327.1:44076..45852 |
| Genes list of scaffold | scaffold327.1 |
| Synonym | pfu_aug2.0_1433.1_11662 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_327.1_50801.t1 | 2 | 1 | HAD_2 | 76 | 157 | 9.0e-10 | 39.0 | 1.3e-06 | 0.0039 | 17.4 |
| pfu_aug1.0_327.1_50801.t1 | 1 | 1 | Hydrolase_6 | 86 | 188 | 3.4e-18 | 65.3 | 2.6e-21 | 7.8e-18 | 64.2 |
| pfu_aug1.0_327.1_50801.t1 | 1 | 1 | Hydrolase_like | 287 | 359 | 5.5e-20 | 70.8 | 3.9e-23 | 1.1e-19 | 69.8 |
| pfu_aug1.0_327.1_50801.t1 | 2 | 2 | HAD_2 | 287 | 333 | 9.0e-10 | 39.0 | 3.0e-07 | 0.00089 | 19.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_327.1_50801.t1 | gi|260827204|ref|XP_002608555.1| | hypothetical protein BRAFLDRAFT_128828 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_327.1_50801.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_327.1_50801.t1 atgcgactacatagaaacttttgttcattattgggatttttgcttcgccgaaatcaaagccggacttcggatattcttta caagagatttttacataacaattcggcgctgacaggtgcccgtccttgtaatacccaaaaccacgtacgggtggaaccgg ggatggttggtccggattacaagtcagcgagaaattatcattggaagcatatggatagaggcaatgtagccaccattctg gattcatatgactcatttttattagatttagacggaactatgtggggagttgaccatattacacctatcccggggatttc ggaggctgtagacaatctaagacgtttgaacaagaatcttctctttgtgaccaataacagtattcatggaaatttacatt atacggagaagtttgaaaattttggatttagcgcaaacgaggatgacatttttggagtagcgcacgcagcggcaatctac ataaaagagatacttaacgtcaatagccccgtatacgtcatcggaagttacggcatgggagcggaattggaacactttgg tgtcgattattttgggatcggtccggacccagacgtggaattagcctcttgggatcccaatgaattgtataaaatgaatt ttaaggacgacgtcggtgctgttctcgtaggattcgaccaacattttcactataacaagatatttaaggcaacaagttat cttttggacaaaaactgtcattttgttgcaactaatgacgtagagatggggtttaaattatcagaaaacagatttcaacc ggtgacaggtaccctggttaaagcggtgtcagcagcatctggtcgggatcctagagttgtgggtaaaccacaccctctta tgctggaatgtgtcaaacgtaagcatgaactggacttgaaacggacactgtttatcggggatagcataaaagcagatata acatttgcgaataatgttggcattgattctgtattagttttgacaggagtaaacaccgaggacgacttgacacactaccc aggtatcaaacctacatacattctggactctttcgcgtctttcgcacgtataaattag |
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Protein
| Protein ID | pfu_aug1.0_327.1_50801.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_327.1_50801.t1 MRLHRNFCSLLGFLLRRNQSRTSDILYKRFLHNNSALTGARPCNTQNHVRVEPGMVGPDYKSARNYHWKHMDRGNVATIL DSYDSFLLDLDGTMWGVDHITPIPGISEAVDNLRRLNKNLLFVTNNSIHGNLHYTEKFENFGFSANEDDIFGVAHAAAIY IKEILNVNSPVYVIGSYGMGAELEHFGVDYFGIGPDPDVELASWDPNELYKMNFKDDVGAVLVGFDQHFHYNKIFKATSY LLDKNCHFVATNDVEMGFKLSENRFQPVTGTLVKAVSAASGRDPRVVGKPHPLMLECVKRKHELDLKRTLFIGDSIKADI TFANNVGIDSVLVLTGVNTEDDLTHYPGIKPTYILDSFASFARIN |
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