Gene
| Gene Model ID | pfu_aug1.0_3208.1_23231 |
|---|---|
| Locus | scaffold3208.1 : 8996 ... 26305 : + |
| To GenomeBrowser | scaffold3208.1:8996..26305 |
| Genes list of scaffold | scaffold3208.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3208.1_23231.t1 | 5 | 1 | TPR_11 | 15 | 78 | 3.5e-30 | 103.4 | 6.0e-19 | 4.5e-16 | 58.2 |
| pfu_aug1.0_3208.1_23231.t1 | 6 | 1 | TPR_2 | 15 | 47 | 1.3e-25 | 87.2 | 5.7e-08 | 4.2e-05 | 23.1 |
| pfu_aug1.0_3208.1_23231.t1 | 5 | 1 | TPR_12 | 16 | 75 | 2.8e-23 | 81.6 | 3.2e-06 | 0.0024 | 17.7 |
| pfu_aug1.0_3208.1_23231.t1 | 6 | 1 | TPR_1 | 16 | 46 | 8.7e-23 | 78.9 | 6.3e-08 | 4.6e-05 | 22.8 |
| pfu_aug1.0_3208.1_23231.t1 | 6 | 1 | TPR_8 | 16 | 47 | 1.5e-16 | 58.8 | 2.9e-05 | 0.022 | 14.5 |
| pfu_aug1.0_3208.1_23231.t1 | 6 | 1 | TPR_14 | 16 | 47 | 1.2e-11 | 44.1 | 0.0076 | 5.6 | 7.8 |
| pfu_aug1.0_3208.1_23231.t1 | 4 | 1 | TPR_16 | 19 | 75 | 1.0e-15 | 57.8 | 7.3e-10 | 5.4e-07 | 30.1 |
| pfu_aug1.0_3208.1_23231.t1 | 3 | 1 | Apc3 | 20 | 69 | 3.0e-09 | 36.9 | 5.4e-06 | 0.004 | 17.2 |
| pfu_aug1.0_3208.1_23231.t1 | 6 | 1 | TPR_7 | 21 | 48 | 9.5e-13 | 46.9 | 1.5e-05 | 0.011 | 15.4 |
| pfu_aug1.0_3208.1_23231.t1 | 5 | 1 | TPR_19 | 24 | 79 | 1.5e-07 | 31.6 | 2.1e-05 | 0.015 | 15.5 |
| pfu_aug1.0_3208.1_23231.t1 | 5 | 1 | TPR_17 | 37 | 68 | 7.1e-08 | 32.0 | 0.00053 | 0.4 | 11.0 |
| pfu_aug1.0_3208.1_23231.t1 | 5 | 2 | TPR_12 | 49 | 113 | 2.8e-23 | 81.6 | 1.2e-06 | 0.00092 | 19.0 |
| pfu_aug1.0_3208.1_23231.t1 | 6 | 2 | TPR_8 | 51 | 76 | 1.5e-16 | 58.8 | 9.2e-05 | 0.068 | 12.9 |
| pfu_aug1.0_3208.1_23231.t1 | 6 | 2 | TPR_2 | 52 | 80 | 1.3e-25 | 87.2 | 0.00086 | 0.64 | 10.0 |
| pfu_aug1.0_3208.1_23231.t1 | 6 | 2 | TPR_14 | 54 | 90 | 1.2e-11 | 44.1 | 0.13 | 94.0 | 4.0 |
| pfu_aug1.0_3208.1_23231.t1 | 6 | 2 | TPR_7 | 56 | 69 | 9.5e-13 | 46.9 | 0.11 | 80.0 | 3.4 |
| pfu_aug1.0_3208.1_23231.t1 | 6 | 2 | TPR_1 | 57 | 81 | 8.7e-23 | 78.9 | 0.00094 | 0.7 | 9.6 |
| pfu_aug1.0_3208.1_23231.t1 | 5 | 2 | TPR_19 | 59 | 107 | 1.5e-07 | 31.6 | 0.00016 | 0.12 | 12.7 |
| pfu_aug1.0_3208.1_23231.t1 | 3 | 2 | Apc3 | 65 | 113 | 3.0e-09 | 36.9 | 0.0016 | 1.2 | 9.3 |
| pfu_aug1.0_3208.1_23231.t1 | 5 | 2 | TPR_17 | 74 | 102 | 7.1e-08 | 32.0 | 0.1 | 75.0 | 3.9 |
| pfu_aug1.0_3208.1_23231.t1 | 5 | 2 | TPR_11 | 75 | 113 | 3.5e-30 | 103.4 | 0.00015 | 0.11 | 12.1 |
| pfu_aug1.0_3208.1_23231.t1 | 6 | 3 | TPR_2 | 86 | 114 | 1.3e-25 | 87.2 | 1.3e-06 | 0.00095 | 18.9 |
| pfu_aug1.0_3208.1_23231.t1 | 6 | 3 | TPR_1 | 86 | 114 | 8.7e-23 | 78.9 | 1.1e-07 | 8.2e-05 | 22.0 |
| pfu_aug1.0_3208.1_23231.t1 | 6 | 3 | TPR_8 | 86 | 105 | 1.5e-16 | 58.8 | 0.0079 | 5.9 | 6.9 |
| pfu_aug1.0_3208.1_23231.t1 | 4 | 2 | TPR_16 | 86 | 121 | 1.0e-15 | 57.8 | 0.0014 | 1.0 | 10.1 |
| pfu_aug1.0_3208.1_23231.t1 | 6 | 3 | TPR_14 | 86 | 120 | 1.2e-11 | 44.1 | 0.002 | 1.5 | 9.6 |
| pfu_aug1.0_3208.1_23231.t1 | 5 | 3 | TPR_11 | 87 | 114 | 3.5e-30 | 103.4 | 0.00045 | 0.34 | 10.5 |
| pfu_aug1.0_3208.1_23231.t1 | 6 | 3 | TPR_7 | 89 | 107 | 9.5e-13 | 46.9 | 0.42 | 310.0 | 1.5 |
| pfu_aug1.0_3208.1_23231.t1 | 5 | 4 | TPR_11 | 296 | 351 | 3.5e-30 | 103.4 | 0.00028 | 0.2 | 11.2 |
| pfu_aug1.0_3208.1_23231.t1 | 5 | 3 | TPR_19 | 296 | 348 | 1.5e-07 | 31.6 | 0.2 | 150.0 | 2.7 |
| pfu_aug1.0_3208.1_23231.t1 | 5 | 3 | TPR_12 | 300 | 353 | 2.8e-23 | 81.6 | 1.0e-05 | 0.0076 | 16.1 |
| pfu_aug1.0_3208.1_23231.t1 | 5 | 4 | TPR_12 | 328 | 394 | 2.8e-23 | 81.6 | 2.1e-10 | 1.6e-07 | 31.1 |
| pfu_aug1.0_3208.1_23231.t1 | 6 | 4 | TPR_2 | 329 | 350 | 1.3e-25 | 87.2 | 9.2e-05 | 0.068 | 13.1 |
| pfu_aug1.0_3208.1_23231.t1 | 6 | 4 | TPR_1 | 329 | 351 | 8.7e-23 | 78.9 | 2.6e-05 | 0.019 | 14.5 |
| pfu_aug1.0_3208.1_23231.t1 | 5 | 3 | TPR_17 | 329 | 349 | 7.1e-08 | 32.0 | 0.048 | 35.0 | 4.9 |
| pfu_aug1.0_3208.1_23231.t1 | 6 | 4 | TPR_8 | 330 | 350 | 1.5e-16 | 58.8 | 0.00087 | 0.64 | 9.9 |
| pfu_aug1.0_3208.1_23231.t1 | 6 | 4 | TPR_14 | 330 | 349 | 1.2e-11 | 44.1 | 0.26 | 190.0 | 3.1 |
| pfu_aug1.0_3208.1_23231.t1 | 6 | 4 | TPR_7 | 335 | 353 | 9.5e-13 | 46.9 | 0.0073 | 5.4 | 7.0 |
| pfu_aug1.0_3208.1_23231.t1 | 4 | 3 | TPR_16 | 337 | 393 | 1.0e-15 | 57.8 | 0.002 | 1.5 | 9.5 |
| pfu_aug1.0_3208.1_23231.t1 | 6 | 5 | TPR_2 | 371 | 394 | 1.3e-25 | 87.2 | 2.6e-05 | 0.019 | 14.8 |
| pfu_aug1.0_3208.1_23231.t1 | 5 | 5 | TPR_12 | 372 | 436 | 2.8e-23 | 81.6 | 4.8e-12 | 3.6e-09 | 36.4 |
| pfu_aug1.0_3208.1_23231.t1 | 6 | 5 | TPR_7 | 372 | 396 | 9.5e-13 | 46.9 | 4.3e-07 | 0.00032 | 20.2 |
| pfu_aug1.0_3208.1_23231.t1 | 6 | 5 | TPR_14 | 372 | 394 | 1.2e-11 | 44.1 | 0.0057 | 4.2 | 8.2 |
| pfu_aug1.0_3208.1_23231.t1 | 5 | 5 | TPR_11 | 373 | 433 | 3.5e-30 | 103.4 | 1.9e-08 | 1.4e-05 | 24.5 |
| pfu_aug1.0_3208.1_23231.t1 | 6 | 5 | TPR_1 | 374 | 394 | 8.7e-23 | 78.9 | 0.0016 | 1.2 | 8.9 |
| pfu_aug1.0_3208.1_23231.t1 | 6 | 5 | TPR_8 | 374 | 394 | 1.5e-16 | 58.8 | 0.00077 | 0.57 | 10.0 |
| pfu_aug1.0_3208.1_23231.t1 | 5 | 4 | TPR_17 | 374 | 389 | 7.1e-08 | 32.0 | 0.12 | 90.0 | 3.6 |
| pfu_aug1.0_3208.1_23231.t1 | 5 | 4 | TPR_19 | 374 | 394 | 1.5e-07 | 31.6 | 0.25 | 190.0 | 2.5 |
| pfu_aug1.0_3208.1_23231.t1 | 4 | 4 | TPR_16 | 375 | 433 | 1.0e-15 | 57.8 | 0.0015 | 1.1 | 9.9 |
| pfu_aug1.0_3208.1_23231.t1 | 3 | 3 | Apc3 | 375 | 427 | 3.0e-09 | 36.9 | 4.0e-06 | 0.003 | 17.6 |
| pfu_aug1.0_3208.1_23231.t1 | 5 | 5 | TPR_19 | 383 | 431 | 1.5e-07 | 31.6 | 0.0036 | 2.7 | 8.3 |
| pfu_aug1.0_3208.1_23231.t1 | 5 | 5 | TPR_17 | 405 | 426 | 7.1e-08 | 32.0 | 0.067 | 49.0 | 4.4 |
| pfu_aug1.0_3208.1_23231.t1 | 6 | 6 | TPR_8 | 408 | 428 | 1.5e-16 | 58.8 | 0.00069 | 0.51 | 10.2 |
| pfu_aug1.0_3208.1_23231.t1 | 6 | 6 | TPR_14 | 408 | 441 | 1.2e-11 | 44.1 | 0.031 | 23.0 | 5.9 |
| pfu_aug1.0_3208.1_23231.t1 | 6 | 6 | TPR_2 | 409 | 434 | 1.3e-25 | 87.2 | 6.2e-05 | 0.046 | 13.6 |
| pfu_aug1.0_3208.1_23231.t1 | 6 | 6 | TPR_7 | 409 | 439 | 9.5e-13 | 46.9 | 0.043 | 32.0 | 4.6 |
| pfu_aug1.0_3208.1_23231.t1 | 6 | 6 | TPR_1 | 411 | 428 | 8.7e-23 | 78.9 | 0.001 | 0.76 | 9.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3208.1_23231.t1 | gi|291239506|ref|XP_002739664.1| | PREDICTED: tetratricopeptide repeat protein 25-like isoform X1 [Saccoglossus kowalevskii] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
| maleGonad | 2 |
Transcript
| Transcript ID | pfu_aug1.0_3208.1_23231.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3208.1_23231.t1 atgtacgacggcgatgaatccgagggtcctaaagggacgttcgaaatttacaaggcagaggctgacacgctttttaagca aggagaatacagaaaatccatcgaaagctacacaacggcattagaacttcagccaggagataagaactgtcttgtatcca gatctaagtgttacctccagcttggtgatacagataatgcacttactgatgctgaatcttcacttcaagaagacaaaaac ttccacaagggagtttatcagaaagcgcaggcattgtattaccaaggtgactttgagctggcccttgtgtattatcaccg tggacacaagcttcgtccagaactacaggagttcagactaggtatacagaaagcccaggaagccatcgataattctgtag gataaaaaatatcaaagacagtaaaagaaaacacaaaacacaaaaaaattaaattatcaaaaaaatgtttgaaatcaaga aaaaaaaattgtgtgaaaaagcccaagaagagacaaggctatggttcgtatggtagaggtgttggacctacacagtctaa agctctggatgccaggagaacagatgggaatgagaaaacgattaagcaattacttggagagttatacggggacaggcagt acttggagaaactactcaaagaaactgatcaacagacagacatgggcaagtccatatctagtcttgtcagtcagggtctg tcttacttggacacacgtacagacttctggagacaacagaagcccatgtacgcacgtaaacacgatagagcgcaacagag acgtaaaacggagatggtagggggcaaattatcagcaaatgactatatcattaaagaactggaacgaatagatcaagcac aaatcgagggtaaataccaggagagtttgaagcgtgcccagcgatgcttaggaaccgtacagacgttctctgaggaagcg gtaccaaacaaaatggaggtcattgccaacctttacagttgtatcggtaatgctcacttggaactcggaaattacgacaa gtcgttggaaaatcatcagatagactatgatatgggtgaacaatacgatatggaagaggcttgctccagaggattggata atttaggccgtgtacacgccaggaagggagactacagtcaggccatagatgtatgggagaagaaattaccgttatcaaaa tcggccttggagagtacgtggctgtaccacgaggtcggacgttgttacttggagatggagcaataccaaaaggcgaaaga ttatggtgaaaaatccctgatcgctgcagaggaggcagaggatacacagtggcagctccaggcgtcagtcttagtggcac agtctgaagttaaaacgcttcagtttcaaaagtttcgttttgaattatga |
|
Protein
| Protein ID | pfu_aug1.0_3208.1_23231.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3208.1_23231.t1 MYDGDESEGPKGTFEIYKAEADTLFKQGEYRKSIESYTTALELQPGDKNCLVSRSKCYLQLGDTDNALTDAESSLQEDKN FHKGVYQKAQALYYQGDFELALVYYHRGHKLRPELQEFRLGIQKAQEAIDNSVGXKISKTVKENTKHKKIKLSKKCLKSR KKNCVKKPKKRQGYGSYGRGVGPTQSKALDARRTDGNEKTIKQLLGELYGDRQYLEKLLKETDQQTDMGKSISSLVSQGL SYLDTRTDFWRQQKPMYARKHDRAQQRRKTEMVGGKLSANDYIIKELERIDQAQIEGKYQESLKRAQRCLGTVQTFSEEA VPNKMEVIANLYSCIGNAHLELGNYDKSLENHQIDYDMGEQYDMEEACSRGLDNLGRVHARKGDYSQAIDVWEKKLPLSK SALESTWLYHEVGRCYLEMEQYQKAKDYGEKSLIAAEEAEDTQWQLQASVLVAQSEVKTLQFQKFRFEL |
|