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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_3020.1_66549
Locus scaffold3020.1 : 1 ... 16824 : +
To GenomeBrowser scaffold3020.1:1..16824
Genes list of scaffold scaffold3020.1
Synonym NA

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_3020.1_66549.t1 1 1 A2M 7 70 7.8e-10 38.1 1.3e-13 2.0e-09 36.8

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 1
>Adult tissues
Dshape 1
mantleEdge 1
mantlePallium 1

Transcript
Transcript IDpfu_aug1.0_3020.1_66549.t1
Definition-
>pfu_aug1.0_3020.1_66549.t1
aaccagagtatcaactgaccgttcttacagagttcctctaacatacaccacgtgggaagtcagcgccatgtcgttggaca
aaacaaaacaaacgccatctaaagctgagttaaaggtaacatcacctttccatataagacttcaacttccaaattcagcg
aaggccatggagcctacaatgttagctgctactgttatcaacaacctcccttacgatgctgagcctccaggaaaacaggt
tatgaagacgtggcaacggttagttaaccagaaggaaggggaatcaaataatgatgtcatagacacaagggatcctgaaa
ttatgggctacaatactaccaggcttatcattactgctcgaggtgacgtcatcggtccttcgataaatgaggtggcaaat
aaagtgcccggattatatggcgccaggacggactcagctgatacagaaacggtagtaaagacaattggacccagacttct
tctgtctaaatattatgaggcgatgaggatgaagaattacggcaaggacaactatactgaagacgtgtgccctgtaaatg
gaggttcaggcgagggacccgttgagctgacagcgtacgtcactggtatacttgtcgatactccatgcttgacgcttctg
cagcttctgacgttgtattcaggaataggtcaggatattgacacctctatgatgaaccttgacatccgggtatcaagtca
aactgcaggtcaacctttcacacacaacttcagaattacacctgaaaatactttacttttgcagtctgtacaagtaccaa
aagacgtgaagcaaattcagctgacatcgaggggaccaggtatagctcttgttgaggttgaacattatcacagtgagcct
caggatccccatacaacattagatgtggcattggcgaatgaaacagctatgagctatactgtggtcatctgcccaagcct
gatagaagagattcgtgcattccagtgcgttttttccttggcacaaagacgcgacatattccagcaaaacaaccctccag
agttatgctctacacaaagaataataagaataagaagattacaaagttcttccagtccgccatcggtaaaatga

Protein
Protein IDpfu_aug1.0_3020.1_66549.t1
Definition-
>pfu_aug1.0_3020.1_66549.t1
TRVSTDRSYRVPLTYTTWEVSAMSLDKTKQTPSKAELKVTSPFHIRLQLPNSAKAMEPTMLAATVINNLPYDAEPPGKQV
MKTWQRLVNQKEGESNNDVIDTRDPEIMGYNTTRLIITARGDVIGPSINEVANKVPGLYGARTDSADTETVVKTIGPRLL
LSKYYEAMRMKNYGKDNYTEDVCPVNGGSGEGPVELTAYVTGILVDTPCLTLLQLLTLYSGIGQDIDTSMMNLDIRVSSQ
TAGQPFTHNFRITPENTLLLQSVQVPKDVKQIQLTSRGPGIALVEVEHYHSEPQDPHTTLDVALANETAMSYTVVICPSL
IEEIRAFQCVFSLAQRRDIFQQNNPPELCSTQRIIRIRRLQSSSSPPSVK

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