Gene
| Gene Model ID | pfu_aug1.0_3002.1_59103 |
|---|---|
| Locus | scaffold3002.1 : 53966 ... 64886 : + |
| To GenomeBrowser | scaffold3002.1:53966..64886 |
| Genes list of scaffold | scaffold3002.1 |
| Synonym | pfu_aug2.0_121.1_03674 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_3002.1_59103.t1 | 2 | 1 | TIP49 | 96 | 159 | 1.9e-07 | 30.1 | 2.5e-05 | 0.011 | 14.5 |
| pfu_aug1.0_3002.1_59103.t1 | 3 | 1 | RuvB_N | 100 | 174 | 6.6e-13 | 48.2 | 7.2e-08 | 3.0e-05 | 23.1 |
| pfu_aug1.0_3002.1_59103.t1 | 3 | 1 | AAA_16 | 101 | 127 | 1.7e-11 | 44.4 | 8.6e-06 | 0.0037 | 17.2 |
| pfu_aug1.0_3002.1_59103.t1 | 3 | 1 | AAA_19 | 101 | 123 | 5.3e-07 | 29.2 | 1.5e-06 | 0.00064 | 19.4 |
| pfu_aug1.0_3002.1_59103.t1 | 2 | 1 | AAA | 104 | 235 | 0.0 | 251.1 | 3.8e-37 | 1.6e-34 | 118.9 |
| pfu_aug1.0_3002.1_59103.t1 | 3 | 1 | AAA_5 | 104 | 174 | 1.1e-10 | 41.3 | 2.3e-05 | 0.0097 | 15.6 |
| pfu_aug1.0_3002.1_59103.t1 | 2 | 1 | AAA_2 | 104 | 188 | 8.8e-09 | 35.5 | 4.3e-05 | 0.018 | 14.9 |
| pfu_aug1.0_3002.1_59103.t1 | 2 | 1 | AAA_14 | 104 | 175 | 7.9e-07 | 29.0 | 2.1e-05 | 0.0091 | 15.9 |
| pfu_aug1.0_3002.1_59103.t1 | 2 | 1 | AAA_22 | 104 | 161 | 8.0e-07 | 29.2 | 0.00014 | 0.06 | 13.5 |
| pfu_aug1.0_3002.1_59103.t1 | 3 | 1 | NTPase_1 | 104 | 134 | 2.1e-06 | 27.5 | 0.00028 | 0.12 | 12.0 |
| pfu_aug1.0_3002.1_59103.t1 | 2 | 1 | AAA_33 | 104 | 138 | 6.9e-06 | 25.9 | 3.2e-05 | 0.013 | 15.3 |
| pfu_aug1.0_3002.1_59103.t1 | 2 | 1 | AAA_17 | 104 | 140 | 7.1e-06 | 26.8 | 2.2e-05 | 0.0095 | 16.7 |
| pfu_aug1.0_3002.1_59103.t1 | 3 | 2 | AAA_16 | 142 | 183 | 1.7e-11 | 44.4 | 0.078 | 33.0 | 4.3 |
| pfu_aug1.0_3002.1_59103.t1 | 3 | 2 | RuvB_N | 208 | 248 | 6.6e-13 | 48.2 | 0.47 | 200.0 | 0.8 |
| pfu_aug1.0_3002.1_59103.t1 | 3 | 3 | RuvB_N | 320 | 434 | 6.6e-13 | 48.2 | 1.1e-06 | 0.00045 | 19.3 |
| pfu_aug1.0_3002.1_59103.t1 | 2 | 2 | TIP49 | 365 | 421 | 1.9e-07 | 30.1 | 5.8e-05 | 0.024 | 13.3 |
| pfu_aug1.0_3002.1_59103.t1 | 3 | 3 | AAA_16 | 366 | 407 | 1.7e-11 | 44.4 | 7.6e-06 | 0.0032 | 17.4 |
| pfu_aug1.0_3002.1_59103.t1 | 3 | 2 | AAA_5 | 368 | 435 | 1.1e-10 | 41.3 | 1.4e-05 | 0.0058 | 16.3 |
| pfu_aug1.0_3002.1_59103.t1 | 2 | 2 | AAA | 369 | 534 | 0.0 | 251.1 | 1.7e-40 | 7.4e-38 | 129.7 |
| pfu_aug1.0_3002.1_59103.t1 | 3 | 2 | AAA_19 | 369 | 398 | 5.3e-07 | 29.2 | 0.0042 | 1.8 | 8.3 |
| pfu_aug1.0_3002.1_59103.t1 | 2 | 2 | AAA_14 | 369 | 437 | 7.9e-07 | 29.0 | 0.00096 | 0.41 | 10.5 |
| pfu_aug1.0_3002.1_59103.t1 | 2 | 2 | AAA_22 | 369 | 390 | 8.0e-07 | 29.2 | 0.0082 | 3.5 | 7.7 |
| pfu_aug1.0_3002.1_59103.t1 | 3 | 2 | NTPase_1 | 369 | 400 | 2.1e-06 | 27.5 | 0.00052 | 0.22 | 11.2 |
| pfu_aug1.0_3002.1_59103.t1 | 2 | 2 | AAA_33 | 369 | 395 | 6.9e-06 | 25.9 | 0.0046 | 1.9 | 8.3 |
| pfu_aug1.0_3002.1_59103.t1 | 2 | 2 | AAA_17 | 369 | 393 | 7.1e-06 | 26.8 | 0.018 | 7.5 | 7.3 |
| pfu_aug1.0_3002.1_59103.t1 | 2 | 2 | AAA_2 | 370 | 512 | 8.8e-09 | 35.5 | 7.0e-06 | 0.003 | 17.5 |
| pfu_aug1.0_3002.1_59103.t1 | 3 | 3 | NTPase_1 | 403 | 434 | 2.1e-06 | 27.5 | 0.72 | 310.0 | 0.9 |
| pfu_aug1.0_3002.1_59103.t1 | 3 | 3 | AAA_5 | 485 | 521 | 1.1e-10 | 41.3 | 0.17 | 73.0 | 3.0 |
| pfu_aug1.0_3002.1_59103.t1 | 3 | 3 | AAA_19 | 497 | 513 | 5.3e-07 | 29.2 | 0.47 | 200.0 | 1.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_3002.1_59103.t1 | gi|260791609|ref|XP_002590821.1| | hypothetical protein BRAFLDRAFT_90046 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_3002.1_59103.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3002.1_59103.t1 atgtacaagttgtgtgtatctcaaggatataccattgatctagaagaattggatttagcaaaactatatggtgtaagctt tatagaggtaagttcttgtaataatgacggttttgttattgttactcagaaaactaaaatatatattgaagatatcaagt gcaaagaacaatttgaacagttaaatagtgtggaatatgaaagtaatcttgttggtggattggactctgtgataaaagag ctagaagatatgattatgacctctataagtatttccaaaaccatgcgtcattttcgtttaccaaaaggaatactcttgag gggtccacctggtactggaaaaacttcagttgtaaatgttgttgctagaaaatgtaaagcatatcttataacaattaatg gacctgaagtgtttggagcaagacctggtgatacagaagagaacatgcggcatatttttgaaaaagccttaacgattagc aaagagggacgttgtgtgctattcatagatgaaattgatgcaatatgcccaagaagatggaaatctggagatgcacagga gagcagggccaccagcttaatgttgtcattttttgacagaattgcatcatgtgacggtataatcatcattggagcgacaa atcgtccaggagaaatggatccagccctacgcagaccgggacggtttgataaagagattatggttaactttccatcacac agccagcgcactgaaattttgagagtgcacactttgaaatttgacacttttggtgaccttgaccttgacagaattgcagc cttgacaaatggatatgtaggggcagacttggcagccgtttgtaatgaggcagcatacatcgctctgatgaatcatacag gccaacagttaccaaagatagagacagatcactttttgactgctgttaagaaggtgcagccatcggtacagaagggcggt gacatcacaatggaccttagaccagtggcctgggaagatatcggtggactacagcttgttaaactgaagcttcaacaggc ggtggagtggcctattgttcaccctgaggcttttgagaggatgggattaccttgtcccaaaggtgtactactatatggtc ccccaggttgctgtaagactacacttgttagagcggcagccaccacatgtggtgccacattcctggctgtcagcggtgct cagctgtattctccattcattggtgattcagagaaaattatcacagaggttttccatagagcaagagctggtgccccatc tataatattcctagatgaagtagattccattgttggtaaaaggggagactctacaagccaaaggagtgttcaagagagag tactgtccacccttttgaatgaaatggatggagttggaattagactagatgaaaagagagattcatcaaacttgaacaaa gtgcccgagggtcatactccagagtcaaacacagtacaagttgttgaaaggtcagaggtcagtaataggaacatcctggt agtggcagccactaatcgtccagacatgctggacgaggcactgaccaggccgggaagattggataagattatttatgtcc caccacctgatacagagattattataaaaatctatcatcaaaaggacaagctccagtga |
|
Protein
| Protein ID | pfu_aug1.0_3002.1_59103.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_3002.1_59103.t1 MYKLCVSQGYTIDLEELDLAKLYGVSFIEVSSCNNDGFVIVTQKTKIYIEDIKCKEQFEQLNSVEYESNLVGGLDSVIKE LEDMIMTSISISKTMRHFRLPKGILLRGPPGTGKTSVVNVVARKCKAYLITINGPEVFGARPGDTEENMRHIFEKALTIS KEGRCVLFIDEIDAICPRRWKSGDAQESRATSLMLSFFDRIASCDGIIIIGATNRPGEMDPALRRPGRFDKEIMVNFPSH SQRTEILRVHTLKFDTFGDLDLDRIAALTNGYVGADLAAVCNEAAYIALMNHTGQQLPKIETDHFLTAVKKVQPSVQKGG DITMDLRPVAWEDIGGLQLVKLKLQQAVEWPIVHPEAFERMGLPCPKGVLLYGPPGCCKTTLVRAAATTCGATFLAVSGA QLYSPFIGDSEKIITEVFHRARAGAPSIIFLDEVDSIVGKRGDSTSQRSVQERVLSTLLNEMDGVGIRLDEKRDSSNLNK VPEGHTPESNTVQVVERSEVSNRNILVVAATNRPDMLDEALTRPGRLDKIIYVPPPDTEIIIKIYHQKDKLQ |
|