Gene
| Gene Model ID | pfu_aug1.0_2963.1_59077 |
|---|---|
| Locus | scaffold2963.1 : 20845 ... 56865 : - |
| To GenomeBrowser | scaffold2963.1:20845..56865 |
| Genes list of scaffold | scaffold2963.1 |
| Synonym | pfu_aug2.0_4.1_13335 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2963.1_59077.t1 | 3 | 1 | ABC2_membrane_3 | 255 | 456 | 3.0e-21 | 75.8 | 1.7e-23 | 3.1e-20 | 72.5 |
| pfu_aug1.0_2963.1_59077.t1 | 2 | 1 | ABC_tran | 533 | 626 | 1.5e-14 | 54.4 | 1.6e-16 | 3.0e-13 | 50.2 |
| pfu_aug1.0_2963.1_59077.t1 | 2 | 1 | AAA_21 | 544 | 567 | 1.2e-06 | 28.7 | 0.00046 | 0.84 | 9.5 |
| pfu_aug1.0_2963.1_59077.t1 | 3 | 2 | ABC2_membrane_3 | 804 | 829 | 3.0e-21 | 75.8 | 0.011 | 20.0 | 4.0 |
| pfu_aug1.0_2963.1_59077.t1 | 3 | 3 | ABC2_membrane_3 | 1039 | 1076 | 3.0e-21 | 75.8 | 0.061 | 110.0 | 1.6 |
| pfu_aug1.0_2963.1_59077.t1 | 2 | 2 | ABC_tran | 1090 | 1128 | 1.5e-14 | 54.4 | 0.39 | 730.0 | 0.4 |
| pfu_aug1.0_2963.1_59077.t1 | 2 | 2 | AAA_21 | 1134 | 1169 | 1.2e-06 | 28.7 | 4.3e-06 | 0.008 | 16.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2963.1_59077.t1 | gi|224088531|ref|XP_002190956.1| | PREDICTED: ATP-binding cassette sub-family A member 1 [Taeniopygia guttata] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_2963.1_59077.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2963.1_59077.t1 atgaaacttgggagttcactcggtatccttgacttcagtactcgcaatgaatttgtgaaggtcatcacagacatctttaa tttaccaagcaccaggtttacatcattacaagcagacttgaatgcgttgaccagtgacttccagaatttacagggtatgg acctaggacaggccgtctgcggaggctcgtctttgttcggtctatctacgggaggcggcattgccgctggtctcgctgga tttactagtttgttggatgaagatgtggacaacaatggttcgggtaacatgacgaccacacctatatcgggaggatcggc aactggcacgactacgcagaaaactacacagaaaactacacagaaaactacacagagaactacgcctagctttggacctg aggcacctcgatgtaagaatcttaacagtgcgttgaagaatgcagaagctcttgagtttgatgtatctaccgaccccaat gctcccatgcccactcacatccagtacagaatacgtatggatacagataaagtggacaatacaagacgtatacaggataa gtattggagaccaaggccacgtggaagtgtaccaaccgacactaagtatttctcatatggatttatctacatacaggaca tgatagaccatgccataatagacttacagaccaagaaagacgtgtctgtaggggtgtttatgcagcagatgccctatccc tgccatgtaaatgacaggtttatttttgcgatatctcgctcgttgcccctgtttctgaccctggcctgggtgttgacagt tgctatggtatgtaaaagtatcgtttatgagaaggaacgccgtctgaaggaagtgatgaagatgatgggccttaataacg gtgtgcactgggtggcatggtttatcaacgccttcattatgatgttcctaacctgtgttgtactggtatttatacttaag tttggaaaagtcctggagtattcagaccctagtgccgtgttggtattcctgacggcattcgccattgctaccatcgcgca gtgcttcctgttcagcgtgtttttctcccatgctaacattgcagcatgtgtggctggtttcctctacttcatgctgtatc taccatacaacctggcagcccaatgggaggacagcatcacacctggatataaattcatctcttgcttgtcatcaagtata tcgtttggttggggctgtagttatttagccagatttgaggaacagtctataggattacagtggagtaactttaatgaatc acctctagtggatgacactttcagcatgtttaagtgtatcttaatgatgctgtttgatgccttgatttatggtctggcca cctggtatatagaggctgtttttcctggccagtacggagttgctcgcaagttctactttccattccaaaagtcatactgg tgtggcacaaaccatagtgattatatgccagaaacagaactggatactagagctgataaaaatttagtcctggaggcaga gccaaaggataggaaacttggtgtgtccgtccgtaacttgaaaaaagtgtataaaacaggcaacaaaacagcagtggatg gactgtcaatcaatttctatgaaggtcagatcacatccttccttgggcataatggagcaggaaagactacaacaatgtcg atcctgacagggttatttccccctactagcggcactgcctatgtacatggctatagcattctatcagagatggacatggt caggaagagtttaggaatgtgtccacagcataacgtcctctttgacaacctctttctgaagtctaagtacagtagcggat actacctgaccatggtgaggaagaaggagggtgatccagatacgtacgacagcgatgatgatgatgatgatttagacgat gcggaagcattcggcagtaggatcacggtagagagccgccctgtgtcagtcaccagtgttagaactgtcaaggaagtcga gcctacttgtgtagagaatgaggatgaggggtacgctgatagtaagagtgacagtgacccacccaccccacctcctgaag atgccactatgataccaggaggtagatttgctagacctgtcacaagactgagcttcagaaggaagaagaagaagtccttc cttaaatatctggctgaacgatcaaaatatggaaaaccaaagattgactccgaagaactggtaactgatacagaatcaat tgcctctgagcccactggatctgagatgggaagtgtcaccaaccttgatgtccctaaccttgatggatttaaccacaagt ctattactcgtaccaaaggcaaagtcctactcataaaacagtttgccgccatgtttatcaaacgtttccaccgtctcaga cggagcaagaaaggcttcttctttgagataatcctgccggctttatttgtactccttgctatggtttttgctgagatcag accccctatatatgaggaaccccctctagaacttcacccctggcaatatgtatccaagataggagacccacatctctttg ttttctacagtaacgatgcccctggaaagaagtcagctgatgacctagttagtacattactaagtagtcctggtatggga actcgctgtatggacccaagtgtaaacactatagaagactacccgtgtcctggcagtacaggagggtggaacaataacta ccgcatacagcccaatactacagtctactcaccggaatgctcatgcgagaaaacgggattccccatatgtcctgcaggtg caggaggtcctgaccccccaagtagacttttggtgacatcagactacctgtataacatgaccggcagaaacatcagtgac tgggccattaaaaccacaaaaagatacagaaaacgaaggtatggcggtttctcatttggtgacaccaatgccttggctgg gctgaatgctacacagctacggggcttccttgacattctgaccagagcggcaaataatggcacagctatattacaaggca atgagactgagtggttagcggcttttgaagcattagctgtctcagacagtgccaagctagaagctgaggttatggaacta ctaggtgaaagcaagaatttgaagagtcccttccagtttgacattgtgggacgtaatcttctcgccatgttttgtatggg aattttcttcttcattctgaatttgctcattgagtacaacttctttataaagagaagtatacttactgacctagtacagg tacgtagggagcttggctactgtccacagtttgacgcctttgacaacatgatgacaggacgagagatactatgcttctat gccagactgagaggagttccagaaaaagacgtcaaaacagacgaacccactacaggtatggatcctcgagctcgcaggtt cctgtggaactgtatcaataacatcgtaagagatggtcgttctgtcattctaacatctcacagtatggaggaatgtgaag ctttatgtggcagactggcaatcatggtcaatggaacgtttagatgtatagggagcatacaacatctcaaaaatagattt ggtgatggttacacgatcattatcagagttgccggagagaggcccgatacggagtcagtagaggactttgtgtctcagac gttcccccacgctgagttacgtgaacatcaccataacatgctgcagtatcaactcaaatctaacgtcaaactgtcataca tatttggacagattgagcgtgccaaagatagactgaacatcgaggattactcagtatctcagaccacactagatcaggtt ttcatcaattttgccaaagaacaaacagatatgttggatgatgagaaaactcaaatgcgatcaaagacaaaatctaaggc cacttgtcacggacagcgtcagcctcagtctccccagtgtcctcgtagcttacagtgcaaccagacacaaggcttcggca tgtga |
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Protein
| Protein ID | pfu_aug1.0_2963.1_59077.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2963.1_59077.t1 MKLGSSLGILDFSTRNEFVKVITDIFNLPSTRFTSLQADLNALTSDFQNLQGMDLGQAVCGGSSLFGLSTGGGIAAGLAG FTSLLDEDVDNNGSGNMTTTPISGGSATGTTTQKTTQKTTQKTTQRTTPSFGPEAPRCKNLNSALKNAEALEFDVSTDPN APMPTHIQYRIRMDTDKVDNTRRIQDKYWRPRPRGSVPTDTKYFSYGFIYIQDMIDHAIIDLQTKKDVSVGVFMQQMPYP CHVNDRFIFAISRSLPLFLTLAWVLTVAMVCKSIVYEKERRLKEVMKMMGLNNGVHWVAWFINAFIMMFLTCVVLVFILK FGKVLEYSDPSAVLVFLTAFAIATIAQCFLFSVFFSHANIAACVAGFLYFMLYLPYNLAAQWEDSITPGYKFISCLSSSI SFGWGCSYLARFEEQSIGLQWSNFNESPLVDDTFSMFKCILMMLFDALIYGLATWYIEAVFPGQYGVARKFYFPFQKSYW CGTNHSDYMPETELDTRADKNLVLEAEPKDRKLGVSVRNLKKVYKTGNKTAVDGLSINFYEGQITSFLGHNGAGKTTTMS ILTGLFPPTSGTAYVHGYSILSEMDMVRKSLGMCPQHNVLFDNLFLKSKYSSGYYLTMVRKKEGDPDTYDSDDDDDDLDD AEAFGSRITVESRPVSVTSVRTVKEVEPTCVENEDEGYADSKSDSDPPTPPPEDATMIPGGRFARPVTRLSFRRKKKKSF LKYLAERSKYGKPKIDSEELVTDTESIASEPTGSEMGSVTNLDVPNLDGFNHKSITRTKGKVLLIKQFAAMFIKRFHRLR RSKKGFFFEIILPALFVLLAMVFAEIRPPIYEEPPLELHPWQYVSKIGDPHLFVFYSNDAPGKKSADDLVSTLLSSPGMG TRCMDPSVNTIEDYPCPGSTGGWNNNYRIQPNTTVYSPECSCEKTGFPICPAGAGGPDPPSRLLVTSDYLYNMTGRNISD WAIKTTKRYRKRRYGGFSFGDTNALAGLNATQLRGFLDILTRAANNGTAILQGNETEWLAAFEALAVSDSAKLEAEVMEL LGESKNLKSPFQFDIVGRNLLAMFCMGIFFFILNLLIEYNFFIKRSILTDLVQVRRELGYCPQFDAFDNMMTGREILCFY ARLRGVPEKDVKTDEPTTGMDPRARRFLWNCINNIVRDGRSVILTSHSMEECEALCGRLAIMVNGTFRCIGSIQHLKNRF GDGYTIIIRVAGERPDTESVEDFVSQTFPHAELREHHHNMLQYQLKSNVKLSYIFGQIERAKDRLNIEDYSVSQTTLDQV FINFAKEQTDMLDDEKTQMRSKTKSKATCHGQRQPQSPQCPRSLQCNQTQGFGM |
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