Gene
| Gene Model ID | pfu_aug1.0_2924.1_30288 |
|---|---|
| Locus | scaffold2924.1 : 4366 ... 23335 : - |
| To GenomeBrowser | scaffold2924.1:4366..23335 |
| Genes list of scaffold | scaffold2924.1 |
| Synonym | pfu_aug2.0_643.1_11030 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2924.1_30288.t1 | 9 | 1 | I-set | 21 | 57 | 0.0 | 316.7 | 4.9e-06 | 0.012 | 15.4 |
| pfu_aug1.0_2924.1_30288.t1 | 8 | 1 | V-set | 21 | 46 | 1.9e-21 | 76.0 | 0.058 | 140.0 | 2.3 |
| pfu_aug1.0_2924.1_30288.t1 | 8 | 1 | ig | 69 | 124 | 2.4e-20 | 72.4 | 0.058 | 140.0 | 2.6 |
| pfu_aug1.0_2924.1_30288.t1 | 9 | 2 | I-set | 103 | 130 | 0.0 | 316.7 | 6.4e-05 | 0.16 | 11.8 |
| pfu_aug1.0_2924.1_30288.t1 | 8 | 1 | Ig_3 | 103 | 125 | 9.8e-26 | 90.0 | 0.5 | 1200.0 | 0.0 |
| pfu_aug1.0_2924.1_30288.t1 | 8 | 2 | V-set | 103 | 129 | 1.9e-21 | 76.0 | 0.012 | 31.0 | 4.5 |
| pfu_aug1.0_2924.1_30288.t1 | 8 | 1 | Ig_2 | 107 | 126 | 7.49975e-42 | 141.3 | 0.48 | 1200.0 | -0.3 |
| pfu_aug1.0_2924.1_30288.t1 | 8 | 2 | Ig_2 | 122 | 186 | 7.49975e-42 | 141.3 | 0.00057 | 1.4 | 9.0 |
| pfu_aug1.0_2924.1_30288.t1 | 9 | 3 | I-set | 128 | 186 | 0.0 | 316.7 | 3.9e-07 | 0.00096 | 18.9 |
| pfu_aug1.0_2924.1_30288.t1 | 8 | 3 | V-set | 135 | 186 | 1.9e-21 | 76.0 | 0.001 | 2.5 | 8.0 |
| pfu_aug1.0_2924.1_30288.t1 | 8 | 2 | ig | 148 | 171 | 2.4e-20 | 72.4 | 0.11 | 280.0 | 1.7 |
| pfu_aug1.0_2924.1_30288.t1 | 8 | 2 | Ig_3 | 155 | 172 | 9.8e-26 | 90.0 | 0.068 | 170.0 | 2.8 |
| pfu_aug1.0_2924.1_30288.t1 | 9 | 4 | I-set | 274 | 364 | 0.0 | 316.7 | 1.1e-13 | 2.7e-10 | 39.9 |
| pfu_aug1.0_2924.1_30288.t1 | 8 | 3 | Ig_2 | 284 | 358 | 7.49975e-42 | 141.3 | 2.2e-05 | 0.056 | 13.5 |
| pfu_aug1.0_2924.1_30288.t1 | 8 | 4 | V-set | 284 | 352 | 1.9e-21 | 76.0 | 0.0022 | 5.5 | 6.9 |
| pfu_aug1.0_2924.1_30288.t1 | 8 | 3 | ig | 287 | 345 | 2.4e-20 | 72.4 | 0.0019 | 4.7 | 7.4 |
| pfu_aug1.0_2924.1_30288.t1 | 8 | 3 | Ig_3 | 324 | 351 | 9.8e-26 | 90.0 | 0.076 | 190.0 | 2.6 |
| pfu_aug1.0_2924.1_30288.t1 | 8 | 5 | V-set | 434 | 504 | 1.9e-21 | 76.0 | 0.082 | 200.0 | 1.8 |
| pfu_aug1.0_2924.1_30288.t1 | 9 | 5 | I-set | 435 | 516 | 0.0 | 316.7 | 3.7e-12 | 9.2e-09 | 35.0 |
| pfu_aug1.0_2924.1_30288.t1 | 8 | 4 | Ig_3 | 435 | 499 | 9.8e-26 | 90.0 | 0.00059 | 1.5 | 9.4 |
| pfu_aug1.0_2924.1_30288.t1 | 8 | 4 | Ig_2 | 437 | 515 | 7.49975e-42 | 141.3 | 4.4e-05 | 0.11 | 12.6 |
| pfu_aug1.0_2924.1_30288.t1 | 8 | 4 | ig | 458 | 498 | 2.4e-20 | 72.4 | 0.23 | 580.0 | 0.7 |
| pfu_aug1.0_2924.1_30288.t1 | 8 | 5 | ig | 555 | 573 | 2.4e-20 | 72.4 | 0.39 | 950.0 | 0.0 |
| pfu_aug1.0_2924.1_30288.t1 | 8 | 5 | Ig_2 | 600 | 683 | 7.49975e-42 | 141.3 | 1.5e-11 | 3.8e-08 | 33.3 |
| pfu_aug1.0_2924.1_30288.t1 | 9 | 6 | I-set | 607 | 687 | 0.0 | 316.7 | 5.7e-16 | 1.4e-12 | 47.2 |
| pfu_aug1.0_2924.1_30288.t1 | 8 | 6 | V-set | 608 | 684 | 1.9e-21 | 76.0 | 5.0e-05 | 0.12 | 12.2 |
| pfu_aug1.0_2924.1_30288.t1 | 8 | 5 | Ig_3 | 611 | 672 | 9.8e-26 | 90.0 | 0.00081 | 2.0 | 8.9 |
| pfu_aug1.0_2924.1_30288.t1 | 8 | 6 | ig | 611 | 672 | 2.4e-20 | 72.4 | 1.7e-08 | 4.3e-05 | 23.5 |
| pfu_aug1.0_2924.1_30288.t1 | 9 | 7 | I-set | 709 | 799 | 0.0 | 316.7 | 3.3e-20 | 8.2e-17 | 60.8 |
| pfu_aug1.0_2924.1_30288.t1 | 8 | 6 | Ig_3 | 721 | 786 | 9.8e-26 | 90.0 | 2.2e-07 | 0.00053 | 20.4 |
| pfu_aug1.0_2924.1_30288.t1 | 8 | 7 | V-set | 722 | 788 | 1.9e-21 | 76.0 | 0.00056 | 1.4 | 8.8 |
| pfu_aug1.0_2924.1_30288.t1 | 8 | 6 | Ig_2 | 723 | 799 | 7.49975e-42 | 141.3 | 1.3e-11 | 3.2e-08 | 33.5 |
| pfu_aug1.0_2924.1_30288.t1 | 8 | 7 | ig | 727 | 784 | 2.4e-20 | 72.4 | 0.0027 | 6.6 | 6.9 |
| pfu_aug1.0_2924.1_30288.t1 | 9 | 8 | I-set | 815 | 905 | 0.0 | 316.7 | 3.2e-21 | 8.0e-18 | 64.0 |
| pfu_aug1.0_2924.1_30288.t1 | 8 | 7 | Ig_3 | 815 | 892 | 9.8e-26 | 90.0 | 9.9e-10 | 2.4e-06 | 27.9 |
| pfu_aug1.0_2924.1_30288.t1 | 8 | 8 | V-set | 824 | 894 | 1.9e-21 | 76.0 | 6.6e-08 | 0.00016 | 21.5 |
| pfu_aug1.0_2924.1_30288.t1 | 8 | 7 | Ig_2 | 826 | 896 | 7.49975e-42 | 141.3 | 1.2e-08 | 3.1e-05 | 24.0 |
| pfu_aug1.0_2924.1_30288.t1 | 8 | 8 | ig | 829 | 886 | 2.4e-20 | 72.4 | 1.6e-05 | 0.039 | 14.0 |
| pfu_aug1.0_2924.1_30288.t1 | 8 | 8 | Ig_3 | 1632 | 1680 | 9.8e-26 | 90.0 | 0.034 | 84.0 | 3.7 |
| pfu_aug1.0_2924.1_30288.t1 | 9 | 9 | I-set | 1634 | 1675 | 0.0 | 316.7 | 0.0001 | 0.25 | 11.2 |
| pfu_aug1.0_2924.1_30288.t1 | 8 | 8 | Ig_2 | 1639 | 1677 | 7.49975e-42 | 141.3 | 0.038 | 94.0 | 3.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2924.1_30288.t1 | gi|71980586|ref|NP_001020984.1| | UNC-89, isoform a [Caenorhabditis elegans] | 2.0e-36 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 2 |
Transcript
| Transcript ID | pfu_aug1.0_2924.1_30288.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2924.1_30288.t1 atggaatcgtcagagaaagccgatgttttgtcagggagttccgattcagaggaggagatccacgtgtaccacctacgtat ccatgacaccgaaccaaaagatgccggagaatggaaaatagaggtcaaggacaaatacggcacggcctcaaccgcctgta accttgctgtcgttgagccagaaaaagaacaagaaaagacagaagaccagaagatggattctgattcaacaacaaagaaa tttacagagggagataactcgacaaaagtgaaaggagaaaagggcgacgcagatgacgaggaaatcctagtgtacaagct gagaattcacgacgccgatctcaaagatgctggccaatggaagtgtgaagtgacagacaagttcaaagatgacgttgata ttacgaagagcagtcgccatgctattataactacacgtgacgatgggaccaccatcttggaaattgtgtcgcttcttgcg tcacgtgacactggcgtgtaccgatgcgaggctcacagtaatataggatacgctaccacagaagccaaacttactgttaa aaaggatgatttcggttatatgagggaccaatattcaactctggaaaaaatcaacaaacgctctgattactattatgagg aaattgtagaggccgaagaaatttcgctgaacaagaaagttcggcctctcaagaagaagcatatcgatgcctattacgaa aactatcgaaatgaaagaaactccctgaaaactctctacgcctatgaaagggacgccattttgaaaatggggatcaaatg ggacaaagactacgccttctattttaaggagcacctaaaaaataaatgcgtagttgaaggagggacggtgatcatgagct gttacgtggcaggaatacctccatttgtaaccagatggttcaaagacggcattgctctctgtagggacgaatacgaaaag tacttcatacgtagtcgtagtgggtacctgagtttggagatcccgataacagatctggatgactccggagattacgaggt ggaggtacggaatgaacaaggcaggattagatcacattgctatctacaagtagaacagacaggagcagatctcatttctt gtgaggaagatgaagaacagaacagaaagctgaccaaaatcgaaatcaaagacgtcaccaaaatcgacgaattccgacca aaaaagcaacctgttgaccaagtggccataatagaggacatgtacatggcaaatgacactgccgcaatcttcacacagcc tcccatattcacaacgctccttccccctaaaatgacagttgatcatggagaaagcctctttttgaaagttgagacggacg gatttccaaaacctagagttgtttggatgagacaaatgcagaagattgaccccgatgcagaaggcataataataagtgaa gatggattaaaaattaagaaagcaaaccacgatgaacattccggtacttacacggcaaaattgaataatggtctaaagga agcggaatcgagttgtaaagttttggtcatggcatacactcatgaatccgacttgccaaaaggagatcagaagaagagtc tgaaagattccgacatcataccaccaagtgattcgagtattcacaaagccgaggaatctgacacaccagaagacaaaact ctacaaatccctgcagttaccccaacagactcacaatgtctaagcagccatcttactaaggctgtaaaagaagagaacct tccaacctcaaaaactagtccccatttttctcaacctttagatgccgagtaccatcccctagaaagagatgaaaacgttc gaatgcagtgtattgtcgctggagatccgtccccaaaaatcatctggttcaaagatggcgagagactacaggaaagtaga aacctgaagattcaatgggaccccgtgacaggaatagccgcaatattgttgaagaaactacacattcttgatactggaga ctatgaatgttacgcctattctgagaacggatgttacaagaccaagacaaccctacacatcaaagctctggaacagcagc agataaagacagtgcctcatgagacgatcaaggagaaagtcttaccaaagttcatatctgatcttaaggataaaacttcc tactccggaggtatcattcgtctggaatgtgccatagatggtcttcctgcaccggatgtaaaatggtgtaaggacggcga aagaattttcccgtcaaagggcaaattttcgatatcgaagctggatactcatcacaccctggttatagaaaactttgtga aggagaatcagggacagtattcatgtgaagcgacaaactcatccggaaccagtgtttctagtgcatatcttactgttaaa gaagctgatgagactgacgctacatctgcagaaccatcctcgcccgtgtttgatgtgaaaatggataatgctatggtggt ccaagggggagtggcagttttcaaatgttctgcgcaaggacaacctttgcctcggttcaaatggcaaaaggacatgattg acgtcacacaatcaaatagaataagtataaacaacagcccttctggggagagcacacttaccatcaataatgtttgccta gaggacactggcatgtatgttgtcactgcaaaaaacagtcttggtagggagaaactatcggctaccctcatgatcaaaga gccagaaaggaaatactcagtggattcaaagacagctcaagaggcagaggaaaagcctgcaaatacaaaagctgacctgg ctaagtcagacgttgataaagttgaacaaccagagtccgtcgaaagagatcattcttcaaatgtactggaaactgaatca ttttctcactttatgaaaaggaaacatcaaggcgatgaagtagccgatggtgtaagtttgactgagtcggaagtcaatga aaaagaagatgccctttcaccaagaaaagaagacaaaaaggaagaagattctaagtctagtgaaaaggatactgatagta aatcagatgtccttcaggcagagtcaccaacagagcaagcagttcaggaatcgaaagaaacgaaatcgtctcatacaaca aaggaagatgtcaaagaagaagctgactctaccgaaaagaaaagagaccatagcacagatgtgttaaaggcagagtcttt agagcatttcatggcaaggaaacatcaagatgacgacattgttgatgggatccatttagcagaacaagaggcactaaaat ctgaatccaaaacctcatcagagaaaaccaaggatggagatgaaaataaaaaagatatcaaaagggaaaagtcaagagaa aaggacaaagatgacaagtcggaagaaaaggacaaagatgaaaaggtcaaagaacatagttcaaatgttcttgaagctga atcgctggaacattttatggctcgaaaacaccaaggagacgatatcgtggatggaattcatttagcggaacaagaagctc atgacagtaaaattgagtcctccgaaggaaacaaggataacgaagcagataaaaaagaagggaatgaaaaagagagcaca gatgaaatatcaaagcgaaaggacaaagaccattgtacaaatgttctggaggcagaatctctggaacattttatgtctag aaaacaccaaggagacgaacttgtcgatggaatacatctagcagaacaagaggccattgacagtgagaaaaagtcatcta atgaaaacaagagtaatgaatctaataaaaaagaagtgaaagatgatgaaaacttaaagaaaatggatagagatacagca gacaagtctgaagaaatgaaatcatcaatacctgctacagataaggaaactgagcaagactctaaagaatgtgttacaaa ggaatcgtctgtttctgttcaaactgagggaagtttcgattttgagactgttccagaagtatcaagtcagcagtctgatg aatcgaagactttaatggaagaaaaagacagtgccaaggaggaggataaaacggataaaaaaccaacaacgaaatcgcac gaggatgagatagacttggaccaactggtatcaaaggcagaagaggttcttggagaacaatcgaagaagacagaagacat atcgtttgaagatgttttggctagatctgtattggaagaatcggttacagaggcagctacagagatggacaagataaaat caaagcgaaaaaagttctcgaaaagtaaaaaacgatcagacagtgttgattcagagacggataaggacgttaaaagctct gtcgtgaaagattctgatgaagcatcaaaggaaacatccggaacatccagtgattctaaggctgcagaggaggaacttgc aaaagcagcatcagtatctaactctgaaacatcgccatctactgacataaagagtgactctactgacggaagtgccagta aaaaggcacagaagaaggcatctctaaagggagtgtctgatgttattattgaagaagtaaaaacagaagaagggcatatc gtagaatctgctgctgcatctaagacatcaacagcagtagaatcgatgtcgtcatcaagcgcagatgtccaatctaaaat ctctgaaaaacctttgcagagggttcaacaccaagtttcacaagaagaatttgcatctgcagttcacgacatcttagacg taaagagtataaagctgaatgaaacaagagaggccgtcattcaacagactacaacatgtgggaaaactcagattctggag gttagcgccagacgggtctctcgccagaatagtcagccaataggtgttgcctctgccacagatcaacatggtccaaacca tcatgagcaccatccaccggagatcctacttccgccggatacccagtatgcatatgaacatacggaaatagaactcacgg taaaggtcaaagccgcccgcggagcaaaggtcacatggtaccatgacggacaaaaagtcaatttcaaaggaaaagggatc aaagagagttcccattacgaactgtttgaggaagaatttcccatcgacaacccggatgcaaaataa |
|
Protein
| Protein ID | pfu_aug1.0_2924.1_30288.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2924.1_30288.t1 MESSEKADVLSGSSDSEEEIHVYHLRIHDTEPKDAGEWKIEVKDKYGTASTACNLAVVEPEKEQEKTEDQKMDSDSTTKK FTEGDNSTKVKGEKGDADDEEILVYKLRIHDADLKDAGQWKCEVTDKFKDDVDITKSSRHAIITTRDDGTTILEIVSLLA SRDTGVYRCEAHSNIGYATTEAKLTVKKDDFGYMRDQYSTLEKINKRSDYYYEEIVEAEEISLNKKVRPLKKKHIDAYYE NYRNERNSLKTLYAYERDAILKMGIKWDKDYAFYFKEHLKNKCVVEGGTVIMSCYVAGIPPFVTRWFKDGIALCRDEYEK YFIRSRSGYLSLEIPITDLDDSGDYEVEVRNEQGRIRSHCYLQVEQTGADLISCEEDEEQNRKLTKIEIKDVTKIDEFRP KKQPVDQVAIIEDMYMANDTAAIFTQPPIFTTLLPPKMTVDHGESLFLKVETDGFPKPRVVWMRQMQKIDPDAEGIIISE DGLKIKKANHDEHSGTYTAKLNNGLKEAESSCKVLVMAYTHESDLPKGDQKKSLKDSDIIPPSDSSIHKAEESDTPEDKT LQIPAVTPTDSQCLSSHLTKAVKEENLPTSKTSPHFSQPLDAEYHPLERDENVRMQCIVAGDPSPKIIWFKDGERLQESR NLKIQWDPVTGIAAILLKKLHILDTGDYECYAYSENGCYKTKTTLHIKALEQQQIKTVPHETIKEKVLPKFISDLKDKTS YSGGIIRLECAIDGLPAPDVKWCKDGERIFPSKGKFSISKLDTHHTLVIENFVKENQGQYSCEATNSSGTSVSSAYLTVK EADETDATSAEPSSPVFDVKMDNAMVVQGGVAVFKCSAQGQPLPRFKWQKDMIDVTQSNRISINNSPSGESTLTINNVCL EDTGMYVVTAKNSLGREKLSATLMIKEPERKYSVDSKTAQEAEEKPANTKADLAKSDVDKVEQPESVERDHSSNVLETES FSHFMKRKHQGDEVADGVSLTESEVNEKEDALSPRKEDKKEEDSKSSEKDTDSKSDVLQAESPTEQAVQESKETKSSHTT KEDVKEEADSTEKKRDHSTDVLKAESLEHFMARKHQDDDIVDGIHLAEQEALKSESKTSSEKTKDGDENKKDIKREKSRE KDKDDKSEEKDKDEKVKEHSSNVLEAESLEHFMARKHQGDDIVDGIHLAEQEAHDSKIESSEGNKDNEADKKEGNEKEST DEISKRKDKDHCTNVLEAESLEHFMSRKHQGDELVDGIHLAEQEAIDSEKKSSNENKSNESNKKEVKDDENLKKMDRDTA DKSEEMKSSIPATDKETEQDSKECVTKESSVSVQTEGSFDFETVPEVSSQQSDESKTLMEEKDSAKEEDKTDKKPTTKSH EDEIDLDQLVSKAEEVLGEQSKKTEDISFEDVLARSVLEESVTEAATEMDKIKSKRKKFSKSKKRSDSVDSETDKDVKSS VVKDSDEASKETSGTSSDSKAAEEELAKAASVSNSETSPSTDIKSDSTDGSASKKAQKKASLKGVSDVIIEEVKTEEGHI VESAAASKTSTAVESMSSSSADVQSKISEKPLQRVQHQVSQEEFASAVHDILDVKSIKLNETREAVIQQTTTCGKTQILE VSARRVSRQNSQPIGVASATDQHGPNHHEHHPPEILLPPDTQYAYEHTEIELTVKVKAARGAKVTWYHDGQKVNFKGKGI KESSHYELFEEEFPIDNPDAK |
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