Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_29120.1_69904
Locus scaffold29120.1 : 15043 ... 18569 : -
To GenomeBrowser scaffold29120.1:15043..18569
Genes list of scaffold scaffold29120.1
Synonym NA

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_29120.1_69904.t1 1 1 Striatin 39 71 7.5e-15 55.4 1.4e-18 1.0e-14 55.0

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_29120.1_69904.t1 gi|242010921|ref|XP_002426206.1| Striatin, putative [Pediculus humanus corporis] 9.0e-19

Transcript
Transcript IDpfu_aug1.0_29120.1_69904.t1
Definition-
>pfu_aug1.0_29120.1_69904.t1
atgttagaagagggtcctggttctcattcaggagggcagctgggcccagtgtcaggggcgatcggaatgatgacaaaaca
acagggggacgattcttccccaagaccacagtactcaatgccggggattttgcatttcttgcagacggaatgggcccgct
tcgaaatggaacgatctcagtgggaagttgaacgggccgagcttcaagtaaaaagcatttcctctcatcttacacaaatt
ttattcattgctcgaatgaattcttactatttgtttgttagatttcatttctgtctgattgaaacctttgtatctcttcg
aaaaataattgattttgaagcataa

Protein
Protein IDpfu_aug1.0_29120.1_69904.t1
Definition-
>pfu_aug1.0_29120.1_69904.t1
MLEEGPGSHSGGQLGPVSGAIGMMTKQQGDDSSPRPQYSMPGILHFLQTEWARFEMERSQWEVERAELQVKSISSHLTQI
LFIARMNSYYLFVRFHFCLIETFVSLRKIIDFEA

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