Gene
| Gene Model ID | pfu_aug1.0_29.1_65191 |
|---|---|
| Locus | scaffold29.1 : 79336 ... 101167 : + |
| To GenomeBrowser | scaffold29.1:79336..101167 |
| Genes list of scaffold | scaffold29.1 |
| Synonym | pfu_aug2.0_1100.1_01389 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_29.1_65191.t1 | 4 | 1 | Period_C | 4 | 46 | 2.9e-10 | 40.1 | 0.23 | 690.0 | -0.4 |
| pfu_aug1.0_29.1_65191.t1 | 2 | 1 | PAS | 132 | 167 | 1.1e-11 | 44.4 | 0.0038 | 11.0 | 5.7 |
| pfu_aug1.0_29.1_65191.t1 | 2 | 1 | PAS_11 | 134 | 172 | 3.9e-16 | 58.9 | 0.026 | 76.0 | 3.3 |
| pfu_aug1.0_29.1_65191.t1 | 2 | 1 | PAS_3 | 135 | 174 | 2.1e-11 | 43.7 | 0.0083 | 24.0 | 5.0 |
| pfu_aug1.0_29.1_65191.t1 | 2 | 2 | PAS | 300 | 404 | 1.1e-11 | 44.4 | 2.1e-12 | 6.3e-09 | 35.6 |
| pfu_aug1.0_29.1_65191.t1 | 2 | 2 | PAS_11 | 305 | 409 | 3.9e-16 | 58.9 | 1.4e-17 | 4.1e-14 | 52.4 |
| pfu_aug1.0_29.1_65191.t1 | 2 | 2 | PAS_3 | 320 | 401 | 2.1e-11 | 43.7 | 2.1e-12 | 6.3e-09 | 35.8 |
| pfu_aug1.0_29.1_65191.t1 | 4 | 2 | Period_C | 680 | 723 | 2.9e-10 | 40.1 | 0.031 | 91.0 | 2.5 |
| pfu_aug1.0_29.1_65191.t1 | 4 | 3 | Period_C | 913 | 1012 | 2.9e-10 | 40.1 | 1.5e-11 | 4.4e-08 | 32.9 |
| pfu_aug1.0_29.1_65191.t1 | 4 | 4 | Period_C | 1155 | 1291 | 2.9e-10 | 40.1 | 3.3e-07 | 0.00099 | 18.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_29.1_65191.t1 | gi|15420402|gb|AAK97374.1|AF353619_1 | circadian clock protein period [Bulla gouldiana] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_29.1_65191.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_29.1_65191.t1 atgcagagtagcagtagcagcttcagcatgtctcttagcggaagcgatacggtcgaagaccaaccatccacaagtggatg tagtagtgatatggcacattccaaacaacaaaaggaaagaaggaaggaacgtgtcaagcactatctcaaacaacttaaag ccatggttcctccggccatgggaagtcgggggaaaatgggcactttgtcggcactacagcatgtggtggacagtatgaag aaaatacaagaagggaaagaaaagactgcgttggaaaagcaggatgtcttggagaaaagtttgaacgcatcgctatatga aggggaaggacaacttccgaagcagaccctgaaaacaaaagactgtctgcggataacactgaggtcaagggattttaccg taatgaatgtgtcgtctaatttaaacaagttactggggtatccaatgctttcctggaatggcagagatctgatacatttc attcacaagaaagacgtagtgaccgtcaacagtaatctggcatacgagtcggaaaacgtctgtgctcctaatgagagaga agaggaaaaagaacaagatgacgtcagaaagtatttctacttcaggatcagacattacaagagtttgcagtcgggattca gcctgatgaaggccgatcagtacacagcgtttcaggcgtcagtcgttctgaaaactcacgattctggcccagattacagt aacctaaatctgaacgtgaatttgaacgaagacgaggataaatgtccgcacaaatacctgattctggaatgtgttcctct gaagtcggcatatggaattgataacctaagcctggagaggtttactttcatcaccagacacaccctgttctgtagcttca gctacatgcatcacaactccgaaaggttcaccttcatcaccagacacaccctgttctgtagcttcagctacatgcatcac aatgctatccccctgcttggatatttaccacaggaccttgtgggcatgtctatatttgatttctaccactcagatgacct tgatagtctctacaatacgtacaaacaagtggtatctgctaaaggtactccaattaaaggggcaccgattcgtttccgag ccagaaacggcagctacgtttatctggagacagagtggtcgagctttgctaatccctggtcgcgcaggctcgagtttatc atcggtcaacataccgtcatcaagagtcccaaaaatagtaacgtgtttgcagacattgtgacgacacctctaccggaacc cggcgaaagtgtgcagaaaactcagcagaagatcagacaactcttgctgaagccaattgttgaacaccaatccgaggata tacccagcagctctcaagatgaaaagacaactcctccaacattttctgttcatcgcagtcgtaaaagaagacgtattcaa atgcaaaacagcgagtcagaagaagagcttcataaagtagagaagatttcgactacggtagagcagatgagagatgacat cgatagaaagccgcagattgtgtctaacagtgacgtcagtctctcaccatcacagcaactcttccaggacaatgatacat cagttgcctatgaacagcttaactacaccaataatattaaaaaattcttactcagccaacctagatcgtactcatcgaaa tcggattccaagtcggacaacaaaagtccgttgtcaaacgaggagtcagacgaagtggaattccaggagcctgaggaagt ccctgccacagtggatgattttgaagtggacatctcagtacccaaaccccccagctttggcagtagtactaaggtattac tctctgagcaagggcagcgagaggaggtcgcctctagccccgcccatcataatgaggacatcacggaggagcctgaacct ctcaaagaaaccctccctatccccccgccccctctctccatgccaaccataataatgccgccaccccctccggtcatgga aaaagaggatcacccaaaactgattcacctaacacaagaagcgctaatcaaacacacaaggctacaggagaaaatctacg tcagtcaagcgacacacgatcggaacatcatgatgaagcaccaggatatgacgggcgtcatgacgcacgattcgcagcgt atgaagcggacccacagtcccgactcggacatgtgggtgtccaggggaagtaaggcttacaaacaggaacaaggggactt actccagccgcccttcccacttagcgtccaacagcaggacctcagcttcgagaaaacacaggctttaaaagccgctcact ctcttatggacgggagttttccgggcagtccaatggcaatttacccggccggagttccgtgtagcgtaccgtcagatact tctattaattccacagcgtctgcatctccattgaaacaacccacacagagaacagtggcgagtactatggcagggaagat gcagtggccctactacccacaggccggagtatccttcatcccccaagtgatgggtggattctaccagactcagcagcctg ccttcacccaggttatgggacagaccaccctgggccatcccgttacaatgcagggctcctcaatgattcccgtcaccatg ctacccagcacacacaccagtattaacacgcgcggaatgaggatcccaacatgtggatattcttatggggcaggttttca gcccttactttctgagaatggaactaaaatagctacaacttcagacatgtcatcaacggaggaaacaagctcatcttacc tgtatctgttagaattagacgaaaataacagtgctacaccagaggatatggagggagtacgtactcagtacggtgctgtg aattcaggcgttagcctcagaaaacgagtcaccgaaccaccatggttacagacggtgcactggacaccgaagcttgcctt gttgtacaccgtaccacggaggaagaagcaccgcattcttaaggaggacagggacgctttgtgtaagctgaaatcgtcag atcttgtactggaacagatgaccgcgctgcaggaggaagtgacgagcgaaccaaaatccccggttgtggatgaagagagt gactacctattcccactggaagagagtgagcttcagaaattaatggaatctgccgacgtttctagtgatcaagatagtag tgaaatgtccgtgtgtagcatggaaagaagccaggacgatatgttgtcaagtgagataattggactcgaaaacaacaaaa gtagcgaaagtaaatcggaaaaaactaacgttgagaattatgacaaaaacgcagcagaaagtgagtcagaaaaattacga gatgaaaaagctatgtcatgtgattctggggatcaggaaagtgtcgaatctccgaaggaaaatattgaatcgtctagtcg gaaatctgatggagaagcgtcgtctgttgagtgcgagagtgattattcaaagactagcgatctcactccaagcgaccaaa ggagtaatgaagaagcatgtagttctattaaagagtcagatggcagtatgaaggaagtggaaacatcctctaaaaattct gatttttcatcgaacgataataagtcgtcttcggaatcggagccagaaaataaaaaagtccctgtgtctgccccatatga tgtgttcttcgtaccattacccgtaaaattttgcaaaaagaacaaaaaaagtgttccgtggttggatgagacagagctca acagtatggtggaaatggagtattccattacttcggaaactttgcagaatcgtttaaaacacgacaaactgagactgaga gatatggcacagccggacttggtgaagcaacagtttgacgctatggttgaggaactgaatttacaaaaagtttcatctcc gaaactgtacggtcggcaggactctcagaaacaagagttccagggtggtccaggtgctgtgttaggacccgtctcaccga agcgattatcttcccatcaaaaacatagagaagggcgtcgcaagagtaaaatcgacgagaaacttttcgagggtctgttt attacgatgtttaatgagaaagaagaattaagttctaaatctgactcgtaccctgacattgaggatgtgtctaattcgct ggatgagatagattag |
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Protein
| Protein ID | pfu_aug1.0_29.1_65191.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_29.1_65191.t1 MQSSSSSFSMSLSGSDTVEDQPSTSGCSSDMAHSKQQKERRKERVKHYLKQLKAMVPPAMGSRGKMGTLSALQHVVDSMK KIQEGKEKTALEKQDVLEKSLNASLYEGEGQLPKQTLKTKDCLRITLRSRDFTVMNVSSNLNKLLGYPMLSWNGRDLIHF IHKKDVVTVNSNLAYESENVCAPNEREEEKEQDDVRKYFYFRIRHYKSLQSGFSLMKADQYTAFQASVVLKTHDSGPDYS NLNLNVNLNEDEDKCPHKYLILECVPLKSAYGIDNLSLERFTFITRHTLFCSFSYMHHNSERFTFITRHTLFCSFSYMHH NAIPLLGYLPQDLVGMSIFDFYHSDDLDSLYNTYKQVVSAKGTPIKGAPIRFRARNGSYVYLETEWSSFANPWSRRLEFI IGQHTVIKSPKNSNVFADIVTTPLPEPGESVQKTQQKIRQLLLKPIVEHQSEDIPSSSQDEKTTPPTFSVHRSRKRRRIQ MQNSESEEELHKVEKISTTVEQMRDDIDRKPQIVSNSDVSLSPSQQLFQDNDTSVAYEQLNYTNNIKKFLLSQPRSYSSK SDSKSDNKSPLSNEESDEVEFQEPEEVPATVDDFEVDISVPKPPSFGSSTKVLLSEQGQREEVASSPAHHNEDITEEPEP LKETLPIPPPPLSMPTIIMPPPPPVMEKEDHPKLIHLTQEALIKHTRLQEKIYVSQATHDRNIMMKHQDMTGVMTHDSQR MKRTHSPDSDMWVSRGSKAYKQEQGDLLQPPFPLSVQQQDLSFEKTQALKAAHSLMDGSFPGSPMAIYPAGVPCSVPSDT SINSTASASPLKQPTQRTVASTMAGKMQWPYYPQAGVSFIPQVMGGFYQTQQPAFTQVMGQTTLGHPVTMQGSSMIPVTM LPSTHTSINTRGMRIPTCGYSYGAGFQPLLSENGTKIATTSDMSSTEETSSSYLYLLELDENNSATPEDMEGVRTQYGAV NSGVSLRKRVTEPPWLQTVHWTPKLALLYTVPRRKKHRILKEDRDALCKLKSSDLVLEQMTALQEEVTSEPKSPVVDEES DYLFPLEESELQKLMESADVSSDQDSSEMSVCSMERSQDDMLSSEIIGLENNKSSESKSEKTNVENYDKNAAESESEKLR DEKAMSCDSGDQESVESPKENIESSSRKSDGEASSVECESDYSKTSDLTPSDQRSNEEACSSIKESDGSMKEVETSSKNS DFSSNDNKSSSESEPENKKVPVSAPYDVFFVPLPVKFCKKNKKSVPWLDETELNSMVEMEYSITSETLQNRLKHDKLRLR DMAQPDLVKQQFDAMVEELNLQKVSSPKLYGRQDSQKQEFQGGPGAVLGPVSPKRLSSHQKHREGRRKSKIDEKLFEGLF ITMFNEKEELSSKSDSYPDIEDVSNSLDEID |
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