Gene
| Gene Model ID | pfu_aug1.0_2839.1_15958 |
|---|---|
| Locus | scaffold2839.1 : 11376 ... 16894 : + |
| To GenomeBrowser | scaffold2839.1:11376..16894 |
| Genes list of scaffold | scaffold2839.1 |
| Synonym | pfu_aug2.0_182.1_07109 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2839.1_15958.t1 | 2 | 1 | zf-C3HC4_3 | 16 | 67 | 2.1e-07 | 30.5 | 1.5e-10 | 2.1e-07 | 30.5 |
| pfu_aug1.0_2839.1_15958.t1 | 2 | 1 | zf-RING_2 | 16 | 62 | 1.8e-06 | 27.6 | 1.3e-09 | 1.8e-06 | 27.6 |
| pfu_aug1.0_2839.1_15958.t1 | 1 | 1 | zf-C3HC4 | 17 | 61 | 3.4e-08 | 32.9 | 2.5e-11 | 3.4e-08 | 32.9 |
| pfu_aug1.0_2839.1_15958.t1 | 2 | 1 | zf-C3HC4_2 | 17 | 61 | 5.9e-07 | 29.4 | 4.4e-10 | 5.9e-07 | 29.4 |
| pfu_aug1.0_2839.1_15958.t1 | 1 | 1 | zf-RING_UBOX | 17 | 59 | 1.7e-06 | 27.6 | 1.3e-09 | 1.7e-06 | 27.6 |
| pfu_aug1.0_2839.1_15958.t1 | 1 | 1 | zf-RING_5 | 17 | 63 | 2.2e-06 | 27.3 | 1.6e-09 | 2.2e-06 | 27.3 |
| pfu_aug1.0_2839.1_15958.t1 | 2 | 2 | zf-C3HC4_3 | 99 | 133 | 2.1e-07 | 30.5 | 0.17 | 220.0 | 1.5 |
| pfu_aug1.0_2839.1_15958.t1 | 2 | 2 | zf-RING_2 | 101 | 133 | 1.8e-06 | 27.6 | 0.27 | 370.0 | 1.0 |
| pfu_aug1.0_2839.1_15958.t1 | 2 | 2 | zf-C3HC4_2 | 102 | 133 | 5.9e-07 | 29.4 | 0.29 | 390.0 | 1.1 |
Transcript
| Transcript ID | pfu_aug1.0_2839.1_15958.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2839.1_15958.t1 atggccgaaggaaggactgaaacaggtatgtcggatgatctaatcacctgtcctatttgctttgaaagatttaaaatacc taaatctttaccttgcctgcatacgtactgtaaaggctgtctccatacatacattacgaaagctgtatcagaaagcaaac cgaaagtagaatgtcctacttgccgtacctccgttcgtgactttaccggacaggatgttgataaatggattgagggtttg cccacaaactttattgtgaattctcttattgaacgcgaagaaatgcaaaccggaaaaagaaactgtgacatttgtttgca cttggataaaagtgtgtcggcgacaaaatggtgtaatgagtgttcagaggcgtattgcgatggatgctctcaaagtcata cttttcataaaatgtttagaaaacatgcattaatacaaatcaaagatgcccgaacagacatggtttttgcaaaggacgaa aactcttttgattgttccgtccataaaaatcgcaaagttgaacttttctgttttgaccattctgaaccttgttgtcttac atgtatgactgtccatcacaggaaatgtgacaaagttactacacttgaagaagcggccgagaattttaggaaggatccta cattcgtctcctttacaaaacgtatgaatgagttgacatttgaattgagaaatgagagaactcgtcacgataaaacagag aaaacggttgcattggaactctcccaggtcaaagatcaagctcaggcaaagaagcaagaaatgataaagcatatcaaaaa gttatataccaagtttgaaggagaaatccaagtgatagagaaacaacgtgagacagaggaccattccggaatccttactc aaaagatagtacagctagaactttttgtgaaaacactcgaaacgctagagtcaacatcatctgacttgtcactctttctg gagttccataaaatgaagggcaaacagaaagactttgaagagtttttggatcaatttaaatcaagaaaaaagcaagaaac tgttgaattcatttgtcatgagaatataagaaaattcgattcactcgtttcttcttttggcaaagttcgcgtcgtcgact ctcttgcacaagcacagtcatcacgatcttcaacaatagactacacttcatgcactttgaaacaagttgtcaacattgag gaagaaggggttagatttatagatgcagtatgtattcgctcaggtacaatacttgccgtggatgacaccaaaaaagctat ctgggcatatgatgataccggaactctactcaccaaatcggacttaccgtctaaaccttgggctcttgctgtagttgatt caaacaaagttgtggttacacttcgcgatcaaaaatcacttcaattctttgcattttacggagagtccaaaacattcaga aaagaaaatatgatccaactgagtgaaacaccatgggcgatagaatatgttgataataacttgttcgtaacgtttgctga aaaagtgaaaaaaatgacattagatggtagaatcgtcagtgaattagtaatcccagggtcaagtacatctctgttcggca ttgctttcttcaatgacaacttcatagtaacagatcatgtaggagaaactcattatgtatatgttataacgatgggcact actcctcgtgtcaaatgcaagtttcagaaaaagtactcaaagttagtatttccgttgggtgtcacctgtgaccgtggcgg gcatatatacgtaggggggtggacgtcaaataacgtaattcaagtatctcaaagtggtgccatattgagggagatactgc caagttcctctggattccagaagcttactggaatcaatttcacacatgacggatcgaaattcattttgacacatgaaaac aagataaccttatttgaattgcattga |
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Protein
| Protein ID | pfu_aug1.0_2839.1_15958.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2839.1_15958.t1 MAEGRTETGMSDDLITCPICFERFKIPKSLPCLHTYCKGCLHTYITKAVSESKPKVECPTCRTSVRDFTGQDVDKWIEGL PTNFIVNSLIEREEMQTGKRNCDICLHLDKSVSATKWCNECSEAYCDGCSQSHTFHKMFRKHALIQIKDARTDMVFAKDE NSFDCSVHKNRKVELFCFDHSEPCCLTCMTVHHRKCDKVTTLEEAAENFRKDPTFVSFTKRMNELTFELRNERTRHDKTE KTVALELSQVKDQAQAKKQEMIKHIKKLYTKFEGEIQVIEKQRETEDHSGILTQKIVQLELFVKTLETLESTSSDLSLFL EFHKMKGKQKDFEEFLDQFKSRKKQETVEFICHENIRKFDSLVSSFGKVRVVDSLAQAQSSRSSTIDYTSCTLKQVVNIE EEGVRFIDAVCIRSGTILAVDDTKKAIWAYDDTGTLLTKSDLPSKPWALAVVDSNKVVVTLRDQKSLQFFAFYGESKTFR KENMIQLSETPWAIEYVDNNLFVTFAEKVKKMTLDGRIVSELVIPGSSTSLFGIAFFNDNFIVTDHVGETHYVYVITMGT TPRVKCKFQKKYSKLVFPLGVTCDRGGHIYVGGWTSNNVIQVSQSGAILREILPSSSGFQKLTGINFTHDGSKFILTHEN KITLFELH |
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