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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_28307.1_33665
Locus scaffold28307.1 : 9056 ... 35294 : +
To GenomeBrowser scaffold28307.1:9056..35294
Genes list of scaffold scaffold28307.1
Synonym pfu_aug2.0_1027.1_24622

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_28307.1_33665.t1 16 1 zf-H2C2_2 356 367 3.4e-32 109.1 0.0073 16.0 6.0
pfu_aug1.0_28307.1_33665.t1 16 1 zf-C2H2_jaz 356 381 2.6e-09 36.9 0.00079 1.7 8.9
pfu_aug1.0_28307.1_33665.t1 13 1 zf-met 357 380 1.6e-08 34.4 0.0023 5.0 7.4
pfu_aug1.0_28307.1_33665.t1 14 1 zf-C2H2 358 369 6.0e-11 42.0 0.95 2000.0 -0.6
pfu_aug1.0_28307.1_33665.t1 16 2 zf-H2C2_2 533 548 3.4e-32 109.1 0.001 2.1 8.7
pfu_aug1.0_28307.1_33665.t1 14 2 zf-C2H2 538 558 6.0e-11 42.0 3.5e-05 0.074 13.4
pfu_aug1.0_28307.1_33665.t1 16 2 zf-C2H2_jaz 538 562 2.6e-09 36.9 1.4e-06 0.003 17.6
pfu_aug1.0_28307.1_33665.t1 15 1 zf-C2H2_4 539 558 1.5e-14 53.1 0.00067 1.4 9.4
pfu_aug1.0_28307.1_33665.t1 13 2 zf-met 539 561 1.6e-08 34.4 3.5e-08 7.5e-05 22.7
pfu_aug1.0_28307.1_33665.t1 16 3 zf-H2C2_2 586 595 3.4e-32 109.1 0.2 420.0 1.5
pfu_aug1.0_28307.1_33665.t1 15 2 zf-C2H2_4 588 608 1.5e-14 53.1 0.03 64.0 4.2
pfu_aug1.0_28307.1_33665.t1 14 3 zf-C2H2 588 612 6.0e-11 42.0 0.014 29.0 5.2
pfu_aug1.0_28307.1_33665.t1 13 3 zf-met 588 607 1.6e-08 34.4 0.091 190.0 2.4
pfu_aug1.0_28307.1_33665.t1 15 3 zf-C2H2_4 624 643 1.5e-14 53.1 0.045 94.0 3.6
pfu_aug1.0_28307.1_33665.t1 16 4 zf-H2C2_2 663 676 3.4e-32 109.1 0.19 410.0 1.5
pfu_aug1.0_28307.1_33665.t1 15 4 zf-C2H2_4 669 688 1.5e-14 53.1 0.01 22.0 5.6
pfu_aug1.0_28307.1_33665.t1 16 3 zf-C2H2_jaz 670 688 2.6e-09 36.9 0.11 230.0 2.1
pfu_aug1.0_28307.1_33665.t1 13 4 zf-met 670 690 1.6e-08 34.4 0.00037 0.79 10.0
pfu_aug1.0_28307.1_33665.t1 16 5 zf-H2C2_2 683 693 3.4e-32 109.1 0.25 540.0 1.1
pfu_aug1.0_28307.1_33665.t1 16 4 zf-C2H2_jaz 711 732 2.6e-09 36.9 0.00047 1.0 9.6
pfu_aug1.0_28307.1_33665.t1 13 5 zf-met 711 731 1.6e-08 34.4 0.02 43.0 4.5
pfu_aug1.0_28307.1_33665.t1 16 6 zf-H2C2_2 789 803 3.4e-32 109.1 0.0029 6.0 7.3
pfu_aug1.0_28307.1_33665.t1 15 5 zf-C2H2_4 793 816 1.5e-14 53.1 0.00045 0.96 9.9
pfu_aug1.0_28307.1_33665.t1 14 4 zf-C2H2 793 813 6.0e-11 42.0 0.056 120.0 3.3
pfu_aug1.0_28307.1_33665.t1 16 5 zf-C2H2_jaz 793 799 2.6e-09 36.9 0.19 390.0 1.3
pfu_aug1.0_28307.1_33665.t1 13 6 zf-met 793 812 1.6e-08 34.4 0.12 260.0 2.0
pfu_aug1.0_28307.1_33665.t1 16 7 zf-H2C2_2 815 831 3.4e-32 109.1 0.047 99.0 3.5
pfu_aug1.0_28307.1_33665.t1 16 6 zf-C2H2_jaz 821 846 2.6e-09 36.9 3.5e-07 0.00073 19.5
pfu_aug1.0_28307.1_33665.t1 15 6 zf-C2H2_4 822 840 1.5e-14 53.1 0.0037 7.9 7.0
pfu_aug1.0_28307.1_33665.t1 14 5 zf-C2H2 822 840 6.0e-11 42.0 0.046 97.0 3.6
pfu_aug1.0_28307.1_33665.t1 13 7 zf-met 822 845 1.6e-08 34.4 5.0e-08 0.00011 22.3
pfu_aug1.0_28307.1_33665.t1 16 8 zf-H2C2_2 857 872 3.4e-32 109.1 0.0028 6.0 7.3
pfu_aug1.0_28307.1_33665.t1 15 7 zf-C2H2_4 862 885 1.5e-14 53.1 0.00076 1.6 9.2
pfu_aug1.0_28307.1_33665.t1 14 6 zf-C2H2 862 885 6.0e-11 42.0 3.8e-05 0.081 13.2
pfu_aug1.0_28307.1_33665.t1 16 7 zf-C2H2_jaz 862 878 2.6e-09 36.9 0.0006 1.3 9.2
pfu_aug1.0_28307.1_33665.t1 13 8 zf-met 862 875 1.6e-08 34.4 0.0003 0.64 10.3
pfu_aug1.0_28307.1_33665.t1 16 8 zf-C2H2_jaz 925 939 2.6e-09 36.9 0.024 52.0 4.1
pfu_aug1.0_28307.1_33665.t1 16 9 zf-H2C2_2 940 960 3.4e-32 109.1 4.6e-07 0.00097 19.3
pfu_aug1.0_28307.1_33665.t1 15 8 zf-C2H2_4 951 973 1.5e-14 53.1 0.00013 0.28 11.6
pfu_aug1.0_28307.1_33665.t1 14 7 zf-C2H2 951 973 6.0e-11 42.0 0.00023 0.5 10.8
pfu_aug1.0_28307.1_33665.t1 16 9 zf-C2H2_jaz 951 970 2.6e-09 36.9 0.82 1700.0 -0.7
pfu_aug1.0_28307.1_33665.t1 13 9 zf-met 951 970 1.6e-08 34.4 0.26 550.0 0.9
pfu_aug1.0_28307.1_33665.t1 16 10 zf-H2C2_2 965 989 3.4e-32 109.1 7.3e-06 0.016 15.5
pfu_aug1.0_28307.1_33665.t1 15 9 zf-C2H2_4 980 1001 1.5e-14 53.1 0.00034 0.71 10.3
pfu_aug1.0_28307.1_33665.t1 14 8 zf-C2H2 980 999 6.0e-11 42.0 6.2e-05 0.13 12.6
pfu_aug1.0_28307.1_33665.t1 13 10 zf-met 980 999 1.6e-08 34.4 0.00048 1.0 9.6
pfu_aug1.0_28307.1_33665.t1 16 10 zf-C2H2_jaz 981 999 2.6e-09 36.9 1.7e-05 0.035 14.2
pfu_aug1.0_28307.1_33665.t1 16 11 zf-H2C2_2 994 1020 3.4e-32 109.1 0.003 6.4 7.2
pfu_aug1.0_28307.1_33665.t1 16 11 zf-C2H2_jaz 1011 1031 2.6e-09 36.9 0.0062 13.0 6.0
pfu_aug1.0_28307.1_33665.t1 15 10 zf-C2H2_4 1012 1033 1.5e-14 53.1 0.001 2.2 8.8
pfu_aug1.0_28307.1_33665.t1 14 9 zf-C2H2 1012 1033 6.0e-11 42.0 5.9e-05 0.13 12.7
pfu_aug1.0_28307.1_33665.t1 13 11 zf-met 1012 1031 1.6e-08 34.4 0.0043 9.1 6.6
pfu_aug1.0_28307.1_33665.t1 16 12 zf-H2C2_2 1026 1045 3.4e-32 109.1 0.00037 0.78 10.1
pfu_aug1.0_28307.1_33665.t1 15 11 zf-C2H2_4 1038 1062 1.5e-14 53.1 0.0034 7.3 7.1
pfu_aug1.0_28307.1_33665.t1 14 10 zf-C2H2 1038 1062 6.0e-11 42.0 0.001 2.2 8.7
pfu_aug1.0_28307.1_33665.t1 16 12 zf-C2H2_jaz 1052 1062 2.6e-09 36.9 0.19 400.0 1.3
pfu_aug1.0_28307.1_33665.t1 16 13 zf-H2C2_2 1055 1078 3.4e-32 109.1 4.7e-08 9.9e-05 22.4
pfu_aug1.0_28307.1_33665.t1 15 12 zf-C2H2_4 1068 1090 1.5e-14 53.1 0.0019 4.1 7.9
pfu_aug1.0_28307.1_33665.t1 16 13 zf-C2H2_jaz 1068 1090 2.6e-09 36.9 0.41 870.0 0.2
pfu_aug1.0_28307.1_33665.t1 14 11 zf-C2H2 1070 1090 6.0e-11 42.0 0.0036 7.7 7.0
pfu_aug1.0_28307.1_33665.t1 16 14 zf-H2C2_2 1083 1106 3.4e-32 109.1 4.4e-08 9.3e-05 22.5
pfu_aug1.0_28307.1_33665.t1 15 13 zf-C2H2_4 1096 1118 1.5e-14 53.1 2.8e-05 0.06 13.7
pfu_aug1.0_28307.1_33665.t1 14 12 zf-C2H2 1096 1118 6.0e-11 42.0 9.0e-05 0.19 12.1
pfu_aug1.0_28307.1_33665.t1 16 14 zf-C2H2_jaz 1096 1115 2.6e-09 36.9 0.84 1800.0 -0.8
pfu_aug1.0_28307.1_33665.t1 13 12 zf-met 1096 1116 1.6e-08 34.4 0.71 1500.0 -0.5
pfu_aug1.0_28307.1_33665.t1 16 15 zf-H2C2_2 1110 1135 3.4e-32 109.1 5.4e-11 1.1e-07 31.7
pfu_aug1.0_28307.1_33665.t1 15 14 zf-C2H2_4 1124 1145 1.5e-14 53.1 4.7e-05 0.1 13.0
pfu_aug1.0_28307.1_33665.t1 14 13 zf-C2H2 1124 1145 6.0e-11 42.0 8.2e-05 0.17 12.2
pfu_aug1.0_28307.1_33665.t1 16 15 zf-C2H2_jaz 1124 1149 2.6e-09 36.9 0.016 33.0 4.7
pfu_aug1.0_28307.1_33665.t1 16 16 zf-H2C2_2 1140 1162 3.4e-32 109.1 0.00032 0.68 10.3
pfu_aug1.0_28307.1_33665.t1 15 15 zf-C2H2_4 1155 1175 1.5e-14 53.1 0.17 370.0 1.8
pfu_aug1.0_28307.1_33665.t1 14 14 zf-C2H2 1155 1178 6.0e-11 42.0 0.12 260.0 2.2
pfu_aug1.0_28307.1_33665.t1 16 16 zf-C2H2_jaz 1155 1174 2.6e-09 36.9 0.61 1300.0 -0.3
pfu_aug1.0_28307.1_33665.t1 13 13 zf-met 1155 1175 1.6e-08 34.4 0.047 100.0 3.3

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_28307.1_33665.t1 gi|256223449|ref|NP_001028513.2| zinc finger protein 407 [Mus musculus] 0.0

Transcript
Transcript IDpfu_aug1.0_28307.1_33665.t1
Definition-
>pfu_aug1.0_28307.1_33665.t1
atggagggggatgacattgatgatatgcacatgtgtctggtgtgccagtcgactgtgctagggctccttaactatgtcaa
ccacaaaaaataccactgcccagggcggaaaaatgccccgggccctgtaccaccatctacaggagagggttcatcattga
acgagcattctgtggcaaccacacctgtgtcgctagggcaaccagggttaagttcaccgccttccaatgtttcggtcagc
cagaattttcttagtcctccagaatttaaacccagtaatcacaacaattttcataccttgaacgttgagacaccgcatag
aaatggcatttcaacaaacgaaaatctcagtttggctagcaataaccaaactgcctcactggacactatgagaaataaca
acatatctgtggatatacaagagaacttttcatcctttgcgtctgatgctttcagtccaagcacgtcccacattgtagac
cctaacatggtcataaacacaaaaacaaatctagacaaaacagaggattttttctcatcattagctctccagagcaaatc
aaacgtgaaggaacctcaaacctcgcatcaacattccgttcaaaatattctacggatgacttttgataaggaaccgggaa
ataatgtggagaatgagcttcccataacaaatattctgaatagcattaatttcagcgatgatgatttggactttgatgag
gatttgttagaggaggcattttcggatgattccgatgtggaggaagttccgccatcaaattacactcgcggaaaatggaa
gccaggatgtggacctggaagacctagagaaagtggcggaaaatggcatccagggcagagacctgtacaggttggtggaa
agtggaaaccaggtcacggtcctactggcggaaaaataaggtcacataatataagggctacaggtggaaagcatctttct
gctagagttgcggaaaagaaaatcaaggaagaggattcctttgcgagaaagatgccaagaacttcaggtggaaaaaatat
acgaatgaacttgggcactggggaatacttgtgtaagccttgtggaaaatatttcaaaaatagattcatttactcaaacc
attgcggaacgaaaatgcacaagagaaatgtgaaagcaagtaagtttagtgaccatgatagtggctccgatacagaaatt
gatgaacattttgcagaaacgaaaccagatgtgccaaaggatgatggaaaaacaggtgatcagggagaaaagaaaaacaa
ctgcgagactccggaagaaaaattcaatgatgaaatttcatactcccaccatgttgatgcagagaattgcaagaaacaag
aagtcggtaccaatgagaatactagtaagactgaaactaacttttcctcaactgctccaatgagttctgaactaaaagaa
ctgaacagcgggagcatggaaaatttgcaggaagttcctgcgctaaacggtgatggaaatttggagcaagatgtagcaat
aaatttggtgaattcagaacagctcgctgtacaaaaatttgaatccaccagcaaaagagaaatggaaacggaggaaaatt
caaatccaatagtctgcactatctgtgataagaagttctatagtaagtatgtcatgacacgacacttgctatcgaagacc
cacagaaaccggacattaggaatgaccaacatcctacctgtaatttctcagtataataagtacatcgttcgtttaagtcc
gtatcagtgcagtccctgccagttctactccaacagagagtctgacctcattcttcacatgtcgatggaggaacatatga
tccaatggaaaacgcttgctgcagaagttatttgtacgttatgcaatttctccagtcattcaaacgaagaaattatagag
catttcacaaagaaccttctacatgtcacgctgacaaaaaagaaccggagactctgcgtcataagagagaagaattacga
cggaaggtgtaaattctgtaacaagaagattcactctagagttcacatgaggagacatttacggcacaagcacatggtgg
acacagatagtatgggccgtgtgaccggcacattccagaaatacgataacgtttgcgacaagtggttgtcggatcggtat
tcctacggacgtcattgtgttggcaacattcacaagaggaatttgaagaagagaaagtttgccgtgaaggaaaatttgat
cgtgaagatggaggacggtaatgtggaagacgtggatacgaagattcgtaacaggttgcaggataaactagtgaacaatc
caacagtcagaaagtacgtacgtagaaaagcaaaaggactcaagaatcataaaatcttcaaatgtgatcactgtgatttt
accgcgtcgtcttatgcggagttacgcccacattatatggctgaacactccaaccatatattagtctgtgatgtatgtga
tttgacattcctgagcgaaaaagctctaaagcttcattacggaagccgtcaacatcaaggaaatttggaagaaatcgaag
gggtaaagggagacaagatgattttctcgtgcgaaatatgtggcaaaaaattcacagatgaagctctgaagcaatggcat
atagacgtgaaacacttacatcctaactcagaggaagcattgaggcaacagtcaggaaaaccagacgtcaccgttgaaaa
gtatcgggaatttctggacgaagttgaacagatggataaaggggaaaggctacactgcatcgaatgtaagaaaaatctga
agaaggaatctattctagaacatttaaggcttcacaccggagataaaccatttatctgtcggtactgtaagcaaggattt
atgtctgctctttcattaagacggcatcttatgacccatttaggcttgacggaaaggagatgcgaaatttgtgggaagga
attcaagaagctagagtcgtacagggagcacatgaaatgtcacgagatggaaaaaacaggcgctcagaagttaatatgtg
aagtgtgtgccatggagttctatttaccaaagcagctgagagcacatatgcgtcggcatggagagaagacgttcaaatgc
ccaatggagaattgtcattggattttccattttgctaatgaactggatgcacacatgaaaacacatacgaatgccagacc
gttcttatgtgatatctgcggttatgccgctggaacaagaaatcgactcaatcgtcatcataagacgcatacaggggaaa
ggaacttccactgcgaatactgtacgtataaggccggtacgagaacccaccttagacggcatatgaggattcacattgga
acaaagccttataaatgtccgtattgtagctacagctgtaacacgcatgagaatatacggaaacacatcatgaagaccaa
aaaacatgaaggaatgtggatttacaactgcaaaagctgcaaatttggtgccaataccgtcaacgatttccgagtccatc
tccaactgtcccatcctgatcaatatgagatgagcagaaatatcgagggcttggctcagctcacaggattgtatatcaaa
caggaggacgtggacaaaccgacagaaggaatgaaaattaatcccatcagagagagaaggtcgcgagacgacggaaaccc
aaataaacgacaccgcaacaggaagagtaacctaatcagcatcgatccattgtatattcatgaagaggtcgtcagttttg
aagataacgaagaatataattcctatcgacaagatcagagctccgatcgtaattggaacggtgcgacacatcaaatggag
cttgaacaagcggtaaaaaatgttgaagccgattcacacaactttgatgaacagaggcagtacattagtcagtcggcgac
tgtcgaaaatgttatgtttttggacacatcccgtcgggctgcgatacaacaggctatgttcaccacaatattcgatagcc
caattaacggaagatcaaacgtaccatga

Protein
Protein IDpfu_aug1.0_28307.1_33665.t1
Definition-
>pfu_aug1.0_28307.1_33665.t1
MEGDDIDDMHMCLVCQSTVLGLLNYVNHKKYHCPGRKNAPGPVPPSTGEGSSLNEHSVATTPVSLGQPGLSSPPSNVSVS
QNFLSPPEFKPSNHNNFHTLNVETPHRNGISTNENLSLASNNQTASLDTMRNNNISVDIQENFSSFASDAFSPSTSHIVD
PNMVINTKTNLDKTEDFFSSLALQSKSNVKEPQTSHQHSVQNILRMTFDKEPGNNVENELPITNILNSINFSDDDLDFDE
DLLEEAFSDDSDVEEVPPSNYTRGKWKPGCGPGRPRESGGKWHPGQRPVQVGGKWKPGHGPTGGKIRSHNIRATGGKHLS
ARVAEKKIKEEDSFARKMPRTSGGKNIRMNLGTGEYLCKPCGKYFKNRFIYSNHCGTKMHKRNVKASKFSDHDSGSDTEI
DEHFAETKPDVPKDDGKTGDQGEKKNNCETPEEKFNDEISYSHHVDAENCKKQEVGTNENTSKTETNFSSTAPMSSELKE
LNSGSMENLQEVPALNGDGNLEQDVAINLVNSEQLAVQKFESTSKREMETEENSNPIVCTICDKKFYSKYVMTRHLLSKT
HRNRTLGMTNILPVISQYNKYIVRLSPYQCSPCQFYSNRESDLILHMSMEEHMIQWKTLAAEVICTLCNFSSHSNEEIIE
HFTKNLLHVTLTKKNRRLCVIREKNYDGRCKFCNKKIHSRVHMRRHLRHKHMVDTDSMGRVTGTFQKYDNVCDKWLSDRY
SYGRHCVGNIHKRNLKKRKFAVKENLIVKMEDGNVEDVDTKIRNRLQDKLVNNPTVRKYVRRKAKGLKNHKIFKCDHCDF
TASSYAELRPHYMAEHSNHILVCDVCDLTFLSEKALKLHYGSRQHQGNLEEIEGVKGDKMIFSCEICGKKFTDEALKQWH
IDVKHLHPNSEEALRQQSGKPDVTVEKYREFLDEVEQMDKGERLHCIECKKNLKKESILEHLRLHTGDKPFICRYCKQGF
MSALSLRRHLMTHLGLTERRCEICGKEFKKLESYREHMKCHEMEKTGAQKLICEVCAMEFYLPKQLRAHMRRHGEKTFKC
PMENCHWIFHFANELDAHMKTHTNARPFLCDICGYAAGTRNRLNRHHKTHTGERNFHCEYCTYKAGTRTHLRRHMRIHIG
TKPYKCPYCSYSCNTHENIRKHIMKTKKHEGMWIYNCKSCKFGANTVNDFRVHLQLSHPDQYEMSRNIEGLAQLTGLYIK
QEDVDKPTEGMKINPIRERRSRDDGNPNKRHRNRKSNLISIDPLYIHEEVVSFEDNEEYNSYRQDQSSDRNWNGATHQME
LEQAVKNVEADSHNFDEQRQYISQSATVENVMFLDTSRRAAIQQAMFTTIFDSPINGRSNVP

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Okinawa Institute of Science and Technology
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