Gene
| Gene Model ID | pfu_aug1.0_2678.1_66409 |
|---|---|
| Locus | scaffold2678.1 : 2356 ... 12526 : + |
| To GenomeBrowser | scaffold2678.1:2356..12526 |
| Genes list of scaffold | scaffold2678.1 |
| Synonym | pfu_aug2.0_1676.1_21737 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2678.1_66409.t1 | 1 | 1 | tRNA-synt_1c | 13 | 203 | 0.0 | 198.6 | 0.0 | 0.0 | 198.2 |
| pfu_aug1.0_2678.1_66409.t1 | 1 | 1 | tRNA-synt_1c_C | 206 | 393 | 0.0 | 162.8 | 0.0 | 0.0 | 162.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2678.1_66409.t1 | gi|84570116|gb|AAI10785.1| | LOC734179 protein [Xenopus laevis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_2678.1_66409.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2678.1_66409.t1 atgaagggggaagacattaaaggattcaacacacccgactctccatggagggacagacctatagaagaatcattacagct gtttgaagacatgaaaaatggtaaagtctctgaaggtgaggccactttaaggatgaaaacaacactagaggaaggaaaga aggatcctgtagcttatagaattaaatttacaccccatcataggacaggggataaatggtgtatatatcccacatatgat tttacacattgcctgtgtgactctattgagcacattacacactctctctgtaccaaagaattccagtcaagacggtcctc ctactattggctatgtaatgtactagatctgtattgtccagtacagtgggagtatggcagactgaatctcaactacacgg tggtgtcaaaacgcaaaataggcaagctcatcaaagaaggctttgtaagagattgggatgaccctcgtttgtttacactg acagcattaagaaggagaggattcccacctgaagccattaacctcttctgtgccaaggttggtgtaacaatggcccagac tgttatagacccttcattactagaggcctgtgttagagatgtacttaatgttactgctccaagagcaatggctgtccttg agcccctaaaagtaaatatatctaatttccctgctgatcataaaggaaaagtaaccgtgccaaacttcccagccgacgag aaaagaggttcacacactgtgcccttctcttccactatttatatcgaaagatcagattatagagagaaatcagataaaag ttacaaaagattatcatcagaccaacctgttggattacgacatgcagggtttgtcataaaagtagagaaggaagtcaagg acagtgatggtaccttaatagagctggttgtctcatgttctcccacctcggacaccaacaagcctaaaggttttatacag tgggtgtccaatcctgtggtctgtgaagtcaggctatacgaaagattattcagacataaaagtccagaggatccaacaga agttcctggagggtttataacagatattaacgagaatactttgtcagtgaactccaatgcctacgtagatgtttctgtga agggagccaaggtttacgacaagtttcagtttgagaggctcggcttctttagtgtggacagggacagtaaccctcaaaag ttggtgtttaacagaacagtaacacttaaggaggatccagggaaaaattaa |
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Protein
| Protein ID | pfu_aug1.0_2678.1_66409.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2678.1_66409.t1 MKGEDIKGFNTPDSPWRDRPIEESLQLFEDMKNGKVSEGEATLRMKTTLEEGKKDPVAYRIKFTPHHRTGDKWCIYPTYD FTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNVLDLYCPVQWEYGRLNLNYTVVSKRKIGKLIKEGFVRDWDDPRLFTL TALRRRGFPPEAINLFCAKVGVTMAQTVIDPSLLEACVRDVLNVTAPRAMAVLEPLKVNISNFPADHKGKVTVPNFPADE KRGSHTVPFSSTIYIERSDYREKSDKSYKRLSSDQPVGLRHAGFVIKVEKEVKDSDGTLIELVVSCSPTSDTNKPKGFIQ WVSNPVVCEVRLYERLFRHKSPEDPTEVPGGFITDINENTLSVNSNAYVDVSVKGAKVYDKFQFERLGFFSVDRDSNPQK LVFNRTVTLKEDPGKN |
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